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Tools: DESeq
and Content provider: Centre for Genomic Regulation (CRG)
and Keywords: Transcriptomics
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Scientific topic
- Bioinformatics1
- Comparative transcriptomics1
- FAIR data1
- Findable, accessible, interoperable, reusable data1
- MicroRNA sequencing1
- Pipelines1
- RNA sequencing1
- RNA-Seq1
- RNA-Seq analysis1
- Small RNA sequencing1
- Small RNA-Seq1
- Small-Seq1
- Software integration1
- Tool integration1
- Tool interoperability1
- Transcriptome1
- Transcriptome profiling1
- Transcriptomics1
- WTSS1
- Whole transcriptome shotgun sequencing1
- Workflows1
- miRNA-seq1
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Tool
- DESeq
- BioContainers1
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- Enrichr1
- FastQC1
- GSEA1
- MultiQC1
- Nextflow1
- QualiMap1
- RStudio1
- SAMtools1
- STAR1
- Salmon1
- Trim Galore1
- UCSC Genome Browser1
- biomaRt1
- ggplot21
- nf-core-rnaseq1
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Content provider
- Centre for Genomic Regulation (CRG)
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Keyword
- Transcriptomics
- BIoinformatics1
- Nextflow1
- RNA-seq1
- RStudio1
- Workflows1
- nf-co.re1
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Competency level
- Beginner1
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Licence
- MIT License1
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Target audience
- Biologists interested in learning about RNA-seq1
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Author
- Anna Delgado Tejedor1
- Fabian Andrade Lozano1
- Julia Ponomarenko1
- Luca Cozzuto1
- Sarah Bonnin1
- Toni Hermoso Pulido1
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Contributor
- Antonia Taiani1
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Resource type
- Course materials1
- Training materials1
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Node
- Spain1
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- Active1
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