Training materials
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ELIXIR TeSS
e-learning
Spatial transcriptomics analysis of a primary dermal melanoma section from Xenium
••• Advanced10x Single Cell melanoma single-cell spatial-transcriptomics xenium -
ELIXIR TeSS
e-learning
Detection of shared microbial strains with SameStr
•• IntermediateMetagenomics Microbial ecology Taxonomy Microbiome metagenomics microbiome microgalaxy -
ELIXIR TeSS
e-learning
Text-Mining articles with GROBID
• BeginnerDigital Humanities text mining work-in-progress -
ELIXIR TeSS
e-learning
Calculating CHEK2 variant effect scores from MAVE data with CountESS
• BeginnerGenetic variation DMS MAVE Variant Analysis clinical genomics functional genomics variant effect -
ELIXIR TeSS
e-learning
AI pipeline for annotating marine species (Project Moorev - Marine)
• BeginnerImaging AI segmentation Imaging Marine ecosystems YOLO biodiversity deep learning object detection -
ELIXIR TeSS
e-learning
GTEx Tissue Modeling with Galaxy Image Learner
•• IntermediateStatistics and probability Deep Learning GTEx Gene Expression Image Learner Statistics and machine learning Tissue Classification -
ELIXIR TeSS
e-learning
Montreal Forced Aligner
• BeginnerDigital Humanities -
ELIXIR TeSS
e-learning
Pangenome analysis with Roary
• BeginnerGenomics Genome Annotation pangenome phylogeny prokaryote -
ELIXIR TeSS
e-learning
Batch Correction and Integration with Seurat or Scanpy
• Beginner10x Single Cell -
ELIXIR TeSS
e-learning
Quantitative Analysis of Histological Staining Using Color Deconvolution
• BeginnerImaging Bioimaging Histology Imaging Microscopy pathology