Training materials
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e-learning
Converting NCBI Data to the AnnData Format
• BeginnerSingle Cell data import data management sc_formats -
e-learning
Converting between common single cell data formats
• BeginnerSingle Cell data import data management sc_formats -
e-learning
Importing files from public atlases
• BeginnerSingle Cell data import data management sc_formats -
e-learning
Inferring single cell trajectories with Scanpy
• BeginnerMIGHTS Single Cell paper-replication -
e-learning
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• Beginner10x MIGHTS Single Cell jupyter-notebook paper-replication -
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• BeginnerMIGHTS Single Cell jupyter-notebook paper-replication -
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• BeginnerMIGHTS Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
Scanpy Parameter Iterator
• BeginnerSingle Cell single-cell -
slides
Workshop Kickoff
• BeginnerTeaching and Hosting Galaxy training -
slides
Automated Cell Annotation
• BeginnerSingle Cell