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• • Scientific topic
  • Algorithms79
  • Computer programming79
  • Data structures79
  • Programming languages79
  • Software development79
  • Software engineering79
  • Comparative transcriptomics43
  • Transcriptome43
  • Transcriptomics43
  • Biodiversity35
  • Exomes35
  • Genome annotation35
  • Genomes35
  • Genomics35
  • Personal genomics35
  • Synthetic genomics35
  • Viral genomics35
  • Whole genomes35
  • Biological sequences33
  • Metagenomics33
  • Sequence analysis33
  • Sequence databases33
  • Shotgun metagenomics33
  • Computational ecology30
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  • Bayesian methods29
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  • Gaussian processes29
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  • Markov processes29
  • Microbial ecology29
  • Microbiome29
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  • Multivariate statistics29
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  • Statistics and probability29
  • Assembly23
  • Sequence assembly23
  • Bottom-up proteomics20
  • Discovery proteomics20
  • MS-based targeted proteomics20
  • MS-based untargeted proteomics20
  • Metaproteomics20
  • Peptide identification20
  • Protein and peptide identification20
  • Proteomics20
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  • Antimicrobial stewardship19
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  • Taxonomy15
  • Epigenomics13
  • DNA variation11
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  • Polymorphism11
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  • Evolution8
  • Evolutionary biology8
  • DNA metabarcoding7
  • Environmental metabarcoding7
  • Exometabolomics7
  • LC-MS-based metabolomics7
  • MS-based metabolomics7
  • MS-based targeted metabolomics7
  • MS-based untargeted metabolomics7
  • Mass spectrometry-based metabolomics7
  • Metabarcoding7
  • Metabolites7
  • Metabolome7
  • Metabolomics7
  • Metabonomics7
  • NMR-based metabolomics7
  • RNA metabarcoding7
  • eDNA metabarcoding7
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• • Tool
  • Galaxy277
  • FastQC32
  • MultiQC22
  • SAMtools21
  • scikit-learn16
  • BEDTools15
  • BWA15
  • Falco13
  • SCANPY13
  • DeepTools12
  • fastp12
  • BLAST11
  • Cutadapt11
  • taxonomy_krona_chart10
  • GEMINI9
  • Bandage8
  • FASTX-Toolkit8
  • NanoPlot8
  • QUAST8
  • ggplot28
  • FreeBayes7
  • JBrowse7
  • Trimmomatic7
  • BamTools6
  • STAR6
  • Biopython5
  • Flye5
  • MetaPhlAn5
  • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
  • Trim Galore5
  • Unicycler5
  • anndata5
  • kraken25
  • BUSCO4
  • Bowtie 24
  • DESeq24
  • Diamond4
  • Galaxy Image Analysis4
  • HISAT24
  • KrakenTools4
  • MACS4
  • MaxQuant4
  • Minimap24
  • Salmon4
  • Workflow4Metabolomics4
  • annotatemyids4
  • bx-python4
  • mothur4
  • scikit-image4
  • seqtk4
  • snpEff4
  • BCFtools3
  • Bracken3
  • Bwa-mem23
  • Clustal 1.8 (Clustal W, Clustal X)3
  • DropletUtils3
  • GOseq3
  • Galactic Circos3
  • GraPhlAn3
  • MAFFT3
  • MSstats3
  • Newick Utilities3
  • RSeQC3
  • RStudio3
  • SeqCode3
  • SortMeRNA3
  • Stacks3
  • export2graphlan3
  • humann3
  • msConvert3
  • xcms3
  • Bakta2
  • Bowtie2
  • Cardinal2
  • CellProfiler2
  • ChIPpeakAnno2
  • Combine Metaphlan and HUMAnN2
  • FASTQE2
  • FastTree2
  • GECKO2
  • GOEnrichment2
  • GenomeScope 2.02
  • HUMAnN22
  • Heinz2
  • InterProScan (EBI)2
  • JBrowse 22
  • MAGeCK2
  • MEME2
  • Medaka2
  • Merqury2
  • Open Babel2
  • R2
  • Racon2
  • Recentrifuge2
  • RepeatMasker2
  • SPAdes2
  • SRA Software Toolkit2
  • StringTie2
  • TRANSIT2
  • Targetfinder.org2
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• • Content provider
  • GTN
  • SIB Swiss Institute of Bioinformatics78
  • DTLS - Dutch Techcentre For Life Sciences32
  • VIB Training & Conferences20
  • Bioinformatics and Biomathematics Training Hub16
  • ELIXIR13
  • ELIXIR Estonia10
  • CINECA PROJECT9
  • IFB French Institute of Bioinformatics9
  • NBIS9
  • CSC - IT Center for Science7
  • Department of Bioinformatics - BiGCaT, Maastricht University6
  • ELXIR-UK DaSH6
  • Barcelona Supercomputing Center (BSC)5
  • ELIXIR Norway5
  • ELIXIR-SI eLearning Platform (EeLP)5
  • Glittr.org5
  • ELIXIR Luxembourg4
  • NanoCommons4
  • University of Cambridge Bioinformatics Training4
  • Centre for Genomic Regulation (CRG)3
  • ELIXIR Portugal3
  • European Bioinformatics Institute (EBI)3
  • University of Edinburgh3
  • BioData.pt2
  • Danish National Health Data Science Sandbox2
  • InterMine2
  • Pattern Institute2
  • PerMedCoE2
  • de.NBI2
  • Cloud-SPAN1
  • ELIXIR Slovenia1
  • EOSC4Cancer1
  • FAIRsharing1
  • Health-RI1
  • Novo Nordisk Foundation Center for Protein Research1
  • SciLifeLab1
  • Seqera1
  • Software Sustainability Institute1
  • The Carpentries1
  • VIB Conferences1
  • WikiPathways1
  • eNanoMapper1
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• • Keyword
  • Galaxy Server administration66
  • Development in Galaxy45
  • Single Cell38
  • biodiversity35
  • microgalaxy33
  • Foundations of Data Science31
  • Ecology30
  • Statistics and machine learning29
  • jupyter-notebook29
  • Microbiome27
  • Transcriptomics27
  • Contributing to the Galaxy Training Material25
  • FAIR Data, Workflows, and Research24
  • Genome Annotation20
  • Proteomics20
  • ansible20
  • Assembly19
  • Using Galaxy and Managing your Data18
  • git-gat18
  • Climate17
  • Introduction to Galaxy Analyses16
  • Teaching and Hosting Galaxy training16
  • fair16
  • interactive-tools16
  • earth-system15
  • Epigenetics13
  • metagenomics13
  • work-in-progress13
  • paper-replication12
  • prokaryote12
  • MIGHTS11
  • Sequence analysis11
  • Variant Analysis11
  • data stewardship10
  • ocean10
  • plants10
  • cyoa9
  • Evolution8
  • Galaxy Community Building8
  • assembly8
  • gmod8
  • label-free8
  • nanopore8
  • DDA7
  • EBV dataset7
  • EBV workflow7
  • Metabolomics7
  • dmp7
  • ecology7
  • español7
  • jbrowse17
  • metabarcoding7
  • Imaging6
  • covid196
  • data management6
  • deploying6
  • deutsch6
  • elixir6
  • illumina6
  • italiano6
  • jobs6
  • ro-crate6
  • train-the-trainers6
  • transcriptomics6
  • 10x5
  • 16S5
  • bacteria5
  • label-TMT115
  • metatranscriptomics5
  • mouse5
  • taxonomic profiling5
  • Community4
  • QC4
  • SIG4
  • Visualisation4
  • diversity4
  • genetic composition EBV class4
  • pangeo4
  • storage4
  • workflows4
  • Bioimaging3
  • ChIP-seq3
  • Digital Humanities3
  • FAIR3
  • Image analysis using Deep Learning3
  • Image segmentation3
  • Overlay3
  • RAD-seq3
  • Synthetic Biology3
  • amr3
  • bioimageio3
  • climate3
  • collections3
  • data import3
  • deep-learning3
  • essential genes3
  • eukaryote3
  • gbif3
  • image analysis3
  • marine omics3
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• • Competency level
  • Beginner
  • Intermediate112
  • Not specified111
  • Advanced15
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• • Licence
  • Creative Commons Attribution 4.0 International554
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• • Target audience
  • Students394
  • Galaxy Administrators111
  • Instructors49
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• • Author
  • Helena Rasche94
  • Bérénice Batut93
  • Saskia Hiltemann53
  • Björn Grüning42
  • Simon Gladman30
  • Yvan Le Bras26
  • Nate Coraor25
  • Nicola Soranzo24
  • Anton Nekrutenko23
  • John Chilton23
  • Marie Josse19
  • Subina Mehta19
  • Wendi Bacon18
  • Katarzyna Kamieniecka17
  • Krzysztof Poterlowicz17
  • Anne Fouilloux16
  • Anthony Bretaudeau16
  • Fotis E. Psomopoulos15
  • Mehmet Tekman15
  • Paul Zierep15
  • Bazante Sanders14
  • Julia Jakiela13
  • The Carpentries13
  • Katherine Do12
  • Maria Doyle12
  • Anup Kumar11
  • Pavankumar Videm11
  • Cristóbal Gallardo10
  • Dave Clements10
  • Donny Vrins10
  • Khaled Jum'ah10
  • Martin Čech10
  • Delphine Lariviere9
  • James Johnson9
  • Marius van den Beek9
  • Anika Erxleben8
  • Daniel Blankenberg8
  • Kaivan Kamali8
  • Joachim Wolff7
  • Laura Cooper7
  • Lucille Delisle7
  • Pratik Jagtap7
  • Robert Andrews7
  • Wolfgang Maier7
  • Allegra Via6
  • Andrew Mason6
  • Anna Syme6
  • Anne Pajon6
  • Branka Franicevic6
  • Clemens Blank6
  • Coline Royaux6
  • ELIXIR Goblet Train the Trainers6
  • Melanie Föll6
  • Michael Charleston6
  • Morgan Howells6
  • Patricia Palagi6
  • Philippe Rocca-Serra6
  • Sara Morsy6
  • Valentin Loux6
  • Xenia Perez Sitja6
  • Alex Ostrovsky5
  • Alexandre Cormier5
  • Dechen Bhuming5
  • Emma Leith5
  • Erwan Corre5
  • Gildas Le Corguillé5
  • Kellie Snow5
  • Korneel Hens5
  • Laura Leroi5
  • Mira Kuntz5
  • Munazah Andrabi5
  • Nick Juty5
  • Polina Polunina5
  • Saskia Lawson-Tovey5
  • Solenne Correard5
  • Stéphanie Robin5
  • Alireza Khanteymoori4
  • Amirhossein Naghsh Nilchi4
  • Beatriz Serrano-Solano4
  • Cyril Monjeaud4
  • Diana Chiang Jurado4
  • Engy Nasr4
  • Florian Heyl4
  • Hélène Chiapello4
  • Keiler Collier4
  • Mallory Freeberg4
  • Marisa Loach4
  • Praveen Kumar4
  • Ray Sajulga4
  • Simon Bray4
  • Simone Leo4
  • Tristan Reynolds4
  • Vivek Bhardwaj4
  • Youri Hoogstrate4
  • Andrea Bagnacani3
  • Avans Hogeschool3
  • Belinda Phipson3
  • Caterina Fuster-Barceló3
  • Daniela Schneider3
  • Dannon Baker3
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• • Contributor
  • Saskia Hiltemann472
  • Helena Rasche411
  • Björn Grüning333
  • Bérénice Batut199
  • Nicola Soranzo157
  • Martin Čech116
  • Cristóbal Gallardo90
  • Niall Beard83
  • Anthony Bretaudeau77
  • Nate Coraor66
  • Wendi Bacon65
  • Armin Dadras56
  • Gildas Le Corguillé55
  • William Durand54
  • Simon Gladman50
  • Marius van den Beek45
  • Mehmet Tekman44
  • Lucille Delisle42
  • Teresa Müller42
  • Yvan Le Bras42
  • Marie Josse36
  • Pavankumar Videm36
  • Beatriz Serrano-Solano29
  • Wolfgang Maier26
  • Maria Doyle22
  • Anne Fouilloux21
  • Anup Kumar20
  • Julia Jakiela20
  • Khaled Jum'ah17
  • Tristan Reynolds17
  • Melanie Föll16
  • Subina Mehta16
  • Paul Zierep15
  • Pratik Jagtap15
  • Simon Bray15
  • Deepti Varshney14
  • Donny Vrins14
  • Marisa Loach14
  • Bazante Sanders13
  • David López13
  • Mira Kuntz13
  • Anton Nekrutenko12
  • Delphine Lariviere12
  • Matthias Bernt12
  • Pablo Moreno12
  • Timothy J. Griffin12
  • Daniela Schneider11
  • Gianmauro Cuccuru11
  • Katarzyna Kamieniecka11
  • Mélanie Petera11
  • Peter van Heusden11
  • Paul De Geest9
  • John Chilton8
  • Kaivan Kamali8
  • Verena Moosmann8
  • Amirhossein Naghsh Nilchi7
  • Anna Syme7
  • Florian Heyl7
  • Hans-Rudolf Hotz7
  • Katherine Do7
  • Leonid Kostrykin7
  • Melissa Burke7
  • Morgan Howells7
  • Tomas Klingström7
  • Alexandre Cormier6
  • Dave Clements6
  • Ekaterina Polkh6
  • Mallory Freeberg6
  • Solenne Correard6
  • Alex Ostrovsky5
  • Alireza Khanteymoori5
  • Bert Droesbeke5
  • Catherine Bromhead5
  • Diana Chiang Jurado5
  • John Davis5
  • Stéphanie Robin5
  • Andrea Bagnacani4
  • Clea Siguret4
  • Coline Royaux4
  • Dave B.4
  • Eli Chadwick4
  • Enis Afgan4
  • Fotis E. Psomopoulos4
  • Phil Reed4
  • Clemens Blank3
  • Engy Nasr3
  • Fabio Cumbo3
  • Jennifer Hillman-Jackson3
  • Joachim Wolff3
  • Keiler Collier3
  • Krzysztof Poterlowicz3
  • Laura Leroi3
  • Mateo Boudet3
  • Mateusz Kuzak3
  • Miaomiao Zhou3
  • Nuwan Goonasekera3
  • Paulo Cilas Morais Lyra Junior3
  • Riccardo Massei3
  • Ross Lazarus3
  • Sofoklis Keisaris3
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• • Resource type
  • e-learning410
  • slides138
  • hands-on tutorial6
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• • Related resource
  • Associated Training Datasets252
  • Associated Workflows232
  • Jupyter Notebook (with Solutions)28
  • Jupyter Notebook (without Solutions)28
  • Quarto/RMarkdown Notebook3
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• • Collection
  • ELIXIR Biodiversity Community5
  • 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
  • ELIXIR hCNV community - collection of courses and materials.1
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