Training materials
Contributors: Saskia Hiltemann
and Related resources: Associated Training Datasets
287 materials found
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ELIXIR TeSS
e-learning
Identification of the micro-organisms in a beer using Nanopore sequencing
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome beer citizen science metagenomics microgalaxy nanopore -
ELIXIR TeSS
e-learning
Taxonomic Profiling and Visualization of Metagenomic Data
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome metagenomics microgalaxy taxonomic profiling -
ELIXIR TeSS
e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• BeginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
ELIXIR TeSS
e-learning
Pathway analysis with the MINERVA Platform
•• IntermediateTranscriptomics Transcriptomics bulk cyoa rna-seq viz -
ELIXIR TeSS
e-learning
Fine tune large protein model (ProtTrans) using HuggingFace
• BeginnerStatistics and probability Statistics and machine learning deep-learning dephosphorylation-site-prediction fine-tuning interactive-tools jupyter-lab machine-learning -
ELIXIR TeSS
e-learning
Inferring single cell trajectories with Scanpy
• BeginnerMIGHTS Single Cell paper-replication -
ELIXIR TeSS
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat
• BeginnerMIGHTS Single Cell paper-replication -
ELIXIR TeSS
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• BeginnerMIGHTS Single Cell jupyter-notebook paper-replication -
ELIXIR TeSS
e-learning
Checking expected species and contamination in bacterial isolate
• BeginnerEcology Biodiversity Whole genome sequencing Genomics Microbiology Microbial ecology Ecology bacteria illumina microgalaxy -
ELIXIR TeSS
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• BeginnerMIGHTS Single Cell jupyter-notebook paper-replication rmarkdown-notebook