Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Transcriptome
    • Exomes17
    • Genome annotation17
    • Genomes17
    • Genomics17
    • Personal genomics17
    • Synthetic genomics17
    • Viral genomics17
    • Whole genomes17
    • Algorithms14
    • Computer programming14
    • Data structures14
    • Programming languages14
    • Software development14
    • Software engineering14
    • Antimicrobial stewardship12
    • Medical microbiology12
    • Microbial genetics12
    • Microbial physiology12
    • Microbial surveillance12
    • Microbiological surveillance12
    • Microbiology12
    • Molecular infection biology12
    • Molecular microbiology12
    • Biological sequences10
    • Sequence analysis10
    • Sequence databases10
    • Assembly9
    • Comparative transcriptomics9
    • Sequence assembly9
    • Transcriptomics9
    • De novo genome sequencing4
    • Genome sequencing4
    • WGS4
    • Whole genome resequencing4
    • Whole genome sequencing4
    • Epidemiology3
    • Gene and protein families3
    • Gene families3
    • Gene family3
    • Gene system3
    • Genes, gene family or system3
    • Protein families3
    • Protein sequence classification3
    • Public health3
    • Public health and epidemiology3
    • AMR2
    • Antibiotic resistance (ABR)2
    • Antifungal resistance2
    • Antimicrobial resistance2
    • Antiprotozoal resistance2
    • Antiviral resistance2
    • DNA variation2
    • Extensive drug resistance (XDR)2
    • Genetic variation2
    • Genomic variation2
    • Multidrug resistance2
    • Multiple drug resistance (MDR)2
    • Multiresistance2
    • Mutation2
    • Pandrug resistance (PDR)2
    • Phylogenetic clocks2
    • Phylogenetic dating2
    • Phylogenetic simulation2
    • Phylogenetic stratigraphy2
    • Phylogeny2
    • Phylogeny reconstruction2
    • Polymorphism2
    • Somatic mutations2
    • Total drug resistance (TDR)2
    • Biodiversity1
    • Communicable disease1
    • Comparative genomics1
    • Computational ecology1
    • Content management1
    • DNA polymorphism1
    • Data management1
    • Database management1
    • Document management1
    • Ecoinformatics1
    • Ecological informatics1
    • Ecology1
    • Ecosystem science1
    • Evolution1
    • Evolutionary biology1
    • File management1
    • Functional genomics1
    • Genetic linkage1
    • Infectious disease1
    • Informatics1
    • Information management1
    • Information science1
    • Knowledge management1
    • Linkage1
    • Linkage mapping1
    • Low complexity sequences1
    • Mapping1
    • Metadata management1
    • Microsatellites1
    • Mobile genetic elements1
    • Show N_FILTERS more
    • Tool
    • Galaxy6
    • BEDTools1
    • DeepTools1
    • HISAT21
    • SAMtools1
    • SCANPY1
    • STAR1
    • Trimmomatic1
    • Show N_FILTERS more
    • Content provider
    • GTN9
    • Show N_FILTERS more
    • Keyword
    • Transcriptomics5
    • Single Cell4
    • work-in-progress3
    • 10x1
    • interactive-tools1
    • Show N_FILTERS more
    • Competency level
    • Beginner
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International9
    • Show N_FILTERS more
    • Target audience
    • Students9
    • Show N_FILTERS more
    • Author
    • Bérénice Batut3
    • Mehmet Tekman3
    • Anne Siegel2
    • Anthony Bretaudeau2
    • Mateo Boudet2
    • Olivier Dameron2
    • Xavier Garnier2
    • Alex Ostrovsky1
    • Anika Erxleben1
    • Diana Chiang Jurado1
    • Fotis E. Psomopoulos1
    • Graham Etherington1
    • Hans-Rudolf Hotz1
    • Mallory Freeberg1
    • Mo Heydarian1
    • Nicola Soranzo1
    • Pavankumar Videm1
    • Sofoklis Keisaris1
    • Toby Hodges1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Contributor
    • Anthony Bretaudeau
    • Helena Rasche40
    • Saskia Hiltemann37
    • Björn Grüning34
    • Nicola Soranzo18
    • Bérénice Batut17
    • Mehmet Tekman17
    • Pavankumar Videm13
    • Wendi Bacon12
    • Cristóbal Gallardo9
    • Gildas Le Corguillé8
    • Lucille Delisle7
    • Niall Beard7
    • Maria Doyle6
    • Martin Čech6
    • Julia Jakiela5
    • William Durand5
    • Armin Dadras4
    • Beatriz Serrano-Solano4
    • Mallory Freeberg4
    • Simon Bray4
    • Amirhossein Naghsh Nilchi3
    • Hans-Rudolf Hotz3
    • Marisa Loach3
    • Marius van den Beek3
    • Pablo Moreno3
    • Stéphanie Robin3
    • Teresa Müller3
    • Xavier Garnier3
    • Andrea Bagnacani2
    • CicoZhang2
    • David López2
    • Florian Heyl2
    • Jonathan Manning2
    • Matthias Bernt2
    • Morgan Howells2
    • Nate Coraor2
    • Wolfgang Maier2
    • Anika Erxleben1
    • Anne Fouilloux1
    • Antonia Taiani1
    • Clea Siguret1
    • Clemens Blank1
    • Diana Chiang Jurado1
    • Donny Vrins1
    • Ekaterina Polkh1
    • Fotis E. Psomopoulos1
    • Graeme Tyson1
    • Graham Etherington1
    • IGC Bioinformatics Unit1
    • James Taylor1
    • Mateusz Kuzak1
    • Mo Heydarian1
    • Mohua Das1
    • Mélanie Petera1
    • Peter-Bram 't Hoen1
    • Sofoklis Keisaris1
    • The Carpentries1
    • Show N_FILTERS more
    • Resource type
    • e-learning8
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets9
    • Associated Workflows5
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Transcriptome

and Competency level: Beginner

and Contributors: Anthony Bretaudeau

9 materials found
  • e-learning

    RNA-seq Alignment with STAR

    • Beginner
    Transcriptomics Transcriptomics
  • e-learning

    RNA-Seq analysis with AskOmics Interactive Tool

    • Beginner
    Transcriptomics Transcriptomics
  • e-learning

    De novo transcriptome reconstruction with RNA-Seq

    • Beginner
    Transcriptomics Transcriptomics
  • e-learning

    Pre-processing of Single-Cell RNA Data

    • Beginner
    Transcriptomics Single Cell work-in-progress
  • e-learning

    Clustering 3K PBMCs with Scanpy

    • Beginner
    Transcriptomics 10x Single Cell
  • e-learning

    Single-cell quality control with scater

    • Beginner
    Transcriptomics Single Cell work-in-progress
  • e-learning

    Downstream Single-cell RNA analysis with RaceID

    • Beginner
    Transcriptomics Single Cell work-in-progress
  • e-learning

    RNA Seq Counts to Viz in R

    • Beginner
    Transcriptomics Transcriptomics interactive-tools
  • slides

    Integrate and query local datasets and distant RDF data with AskOmics using Semantic Web technologies

    • Beginner
    Transcriptomics Transcriptomics
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.