Training materials
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ELIXIR TeSS
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• BeginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy … -
ELIXIR TeSS
e-learning
Genome assembly using PacBio data
•• IntermediateSequence assembly Genomics Biodiversity Assembly assembly biodiversity pacbio -
ELIXIR TeSS
e-learning
Making sense of a newly assembled genome
• BeginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
ELIXIR TeSS
e-learning
Unicycler Assembly
• BeginnerSequence assembly Genomics Microbiology Assembly biodiversity microgalaxy prokaryote -
ELIXIR TeSS
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• BeginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
ELIXIR TeSS
e-learning
Creating a new tutorial
• BeginnerContributing to the Galaxy Training Material -
ELIXIR TeSS
e-learning
De novo transcriptome reconstruction with RNA-Seq
• BeginnerTranscriptomics Transcriptomics -
ELIXIR TeSS
e-learning
Pre-processing of Single-Cell RNA Data
• BeginnerTranscriptomics Single Cell work-in-progress -
ELIXIR TeSS
e-learning
Clustering 3K PBMCs with Scanpy
• BeginnerTranscriptomics 10x Single Cell -
ELIXIR TeSS
e-learning
Single-cell quality control with scater
• BeginnerTranscriptomics Single Cell work-in-progress