Training materials
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ELIXIR TeSS
e-learning
Genome annotation with Maker
••• AdvancedGenomics Genome Annotation eukaryote gmod jbrowse1 maker -
ELIXIR TeSS
e-learning
Refining Genome Annotations with Apollo (prokaryotes)
•• IntermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 biodiversity gmod jbrowse1 microgalaxy … -
ELIXIR TeSS
e-learning
Genome annotation with Maker (short)
•• IntermediateGenomics Genome Annotation eukaryote gmod jbrowse1 maker -
ELIXIR TeSS
e-learning
CRISPR screen analysis
• BeginnerGenomics CRISPR Genome Annotation cell line essential genes genome editing -
ELIXIR TeSS
e-learning
Genome annotation with Prokka
• BeginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
ELIXIR TeSS
e-learning
Masking repeats with RepeatMasker
• BeginnerGenomics Sequence composition, complexity and repeats Genome Annotation biodiversity eukaryote -
ELIXIR TeSS
e-learning
Genome annotation with Funannotate
•• IntermediateGenomics Gene and protein families Genome Annotation biodiversity eukaryote gmod jbrowse1 -
ELIXIR TeSS
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• BeginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy … -
ELIXIR TeSS
e-learning
Chloroplast genome assembly
• BeginnerSequence assembly Assembly biodiversity jbrowse1 nanopore plants -
ELIXIR TeSS
e-learning
Genome assembly using PacBio data
•• IntermediateSequence assembly Genomics Biodiversity Assembly assembly biodiversity pacbio