Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • Spaces
  • Events
  • Materials
  • Workflows
  • Collections
  • e-Learning
  • Learning paths
  • Directory
    • Providers
    • Nodes

TeSSHub makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSSHub in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • DNA variation4
    • Genetic variation4
    • Genomic variation4
    • Mutation4
    • Polymorphism4
    • Somatic mutations4
    • Antimicrobial stewardship1
    • Assembly1
    • Biological sequences1
    • DNA polymorphism1
    • Exomes1
    • Genome annotation1
    • Genomes1
    • Genomics1
    • Medical microbiology1
    • Microbial genetics1
    • Microbial physiology1
    • Microbial surveillance1
    • Microbiological surveillance1
    • Microbiology1
    • Microsatellites1
    • Molecular infection biology1
    • Molecular microbiology1
    • Personal genomics1
    • RFLP1
    • SNP1
    • Sequence analysis1
    • Sequence assembly1
    • Sequence databases1
    • Single nucleotide polymorphism1
    • Synthetic genomics1
    • VNTR1
    • Variable number of tandem repeat polymorphism1
    • Viral genomics1
    • Whole genomes1
    • snps1
    • Show N_FILTERS more
    • Tool
    • BWA
    • Galaxy14
    • fastp5
    • SAMtools4
    • BEDTools3
    • MAFFT3
    • lofreq3
    • BamTools2
    • Bwa-mem22
    • MultiQC2
    • QUAST2
    • QualiMap2
    • SRA Software Toolkit2
    • Unicycler2
    • compute_sequence_length2
    • iVar2
    • snpEff2
    • BUSCO1
    • Circos1
    • Cutadapt1
    • Diamond1
    • FastQC1
    • FreeBayes1
    • Galactic Circos1
    • GenomeScope 2.01
    • Merqury1
    • Minimap21
    • RapidNJ1
    • SALSA1
    • UCSC Genome Browser Utilities1
    • VAPOR1
    • Vcflib1
    • bx-python1
    • gfastats1
    • iqtree1
    • orfipy1
    • purge_dups1
    • seqtk1
    • Show N_FILTERS more
    • Content provider
    • GTN6
    • Show N_FILTERS more
    • Keyword
    • Variant Analysis4
    • one-health3
    • virology3
    • Introduction to Galaxy Analyses1
    • Using Galaxy and Managing your Data1
    • collections1
    • covid191
    • microgalaxy1
    • prokaryote1
    • Show N_FILTERS more
    • Competency level
    • Beginner3
    • Intermediate2
    • Advanced1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International6
    • Show N_FILTERS more
    • Target audience
    • Students6
    • Show N_FILTERS more
    • Author
    • Anton Nekrutenko4
    • Daniel Blankenberg2
    • Dave Clements2
    • Marius van den Beek2
    • Wolfgang Maier2
    • Alex Ostrovsky1
    • Tomas Klingström1
    • Show N_FILTERS more
    • Contributor
    • Anton Nekrutenko
    • Helena Rasche18
    • Saskia Hiltemann17
    • Björn Grüning16
    • Bérénice Batut11
    • Wolfgang Maier10
    • Nicola Soranzo9
    • Niall Beard7
    • William Durand6
    • Armin Dadras4
    • Martin Čech4
    • Anthony Bretaudeau3
    • Maria Doyle3
    • Nate Coraor3
    • Teresa Müller3
    • Verena Moosmann3
    • Cristóbal Gallardo2
    • Gildas Le Corguillé2
    • Mehmet Tekman2
    • Mélanie Petera2
    • Pavankumar Videm2
    • Simon Gladman2
    • Timon Schlegel2
    • Wendi Bacon2
    • Alex Ostrovsky1
    • Alexandre Cormier1
    • Anna Syme1
    • Ava Hoffman1
    • Beatriz Serrano-Solano1
    • Candace Savonen1
    • Dave Clements1
    • Deepti Varshney1
    • Delphine Lariviere1
    • Ekaterina Polkh1
    • Elizabeth Humphries1
    • Fidel Ramirez1
    • Frederick Tan1
    • Friederike Dündar1
    • John Davis1
    • Jörg Wennmann1
    • Katarzyna Kamieniecka1
    • Katherine Cox1
    • Khaled Jum'ah1
    • Mallory Freeberg1
    • Marie Josse1
    • Marisa Loach1
    • Mateo Boudet1
    • Natalie Kucher1
    • TheKharleeci1
    • Tristan Reynolds1
    • Vijay1
    • Yvan Le Bras1
    • Show N_FILTERS more
    • Resource type
    • e-learning6
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows4
    • Associated Training Datasets3
    • Show N_FILTERS more
  • Show materials from all spaces
  • Hide disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email
  • Harvest using OAI-PMH

Email Subscription

Harvest using OAI-PMH

Exchange content using OAI-PMH

Use an OAI-PMH compatible tool to harvest metadata using the OAI-PMH endpoint. In particular, this endpoint can be used for exchanging content between different TeSS instances. See the TeSS documentation for more details.

Tools: BWA

and Contributors: Anton Nekrutenko

and Include disabled: true

6 materials found
  • ELIXIR TeSS

    e-learning

    Pox virus genome analysis from tiled-amplicon sequencing data

    ••• Advanced
    Genetic variation Variant Analysis one-health virology
  • ELIXIR TeSS

    e-learning

    Avian influenza viral strain analysis from gene segment sequencing data

    •• Intermediate
    Genetic variation Variant Analysis one-health virology
  • ELIXIR TeSS

    e-learning

    From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis

    • Beginner
    Genetic variation Variant Analysis covid19 one-health virology
  • ELIXIR TeSS

    e-learning

    Calling variants in non-diploid systems

    • Beginner
    Genetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote
  • ELIXIR TeSS

    e-learning

    Using dataset collections

    •• Intermediate
    Using Galaxy and Managing your Data collections
  • ELIXIR TeSS

    e-learning

    NGS data logistics

    • Beginner
    Introduction to Galaxy Analyses
Training eSupport System
[email protected]
Contribute
About TeSSHub
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSSHub has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.