Training materials
Competency level: Beginner
and Contributors: Beatriz Serrano-Solano
and Related resources: Associated Workflows
15 materials found
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e-learning
Segmentation of Anatomical Structures in Medical 3-D Images
• BeginnerImaging 3D image Computed tomography Conversion Image segmentation Imaging Medical imaging Object feature extraction Overlay Volume rendering -
e-learning
Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy
• BeginnerImaging Image segmentation Imaging Parameter optimisation Validation -
e-learning
Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines
• BeginnerImaging IDR dataset Imaging Overlay Rasterisation Spot detection -
e-learning
16S Microbial analysis with Nanopore data
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy nanopore … -
slides
Whole transcriptome analysis of Arabidopsis thaliana
• BeginnerTranscriptomics Transcriptomics -
e-learning
Whole transcriptome analysis of Arabidopsis thaliana
• BeginnerTranscriptomics Transcriptomics miRNA plants stress tolerance -
e-learning
Analysis of plant scRNA-Seq Data with Scanpy
• BeginnerTranscriptomics Single Cell paper-replication plants -
e-learning
Generating a single cell matrix using Alevin
• BeginnerTranscriptomics MIGHTS Single Cell paper-replication -
e-learning
Functionally Assembled Terrestrial Ecosystem Simulator (FATES)
• BeginnerClimate interactive-tools -
e-learning
Introduction to Image Analysis using Galaxy
• BeginnerImaging Conversion Fluorescence microscopy Image segmentation Image thresholding Imaging Object counting Overlay
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