Training materials
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e-learning
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy
•• IntermediateImaging Data handling Data management Data sharing Imaging ROI selection -
e-learning
Tracking of mitochondria and capturing mitoflashes
•• IntermediateImaging Imaging Isolated object tracking Temporal analysis Time-lapse data -
e-learning
16S Microbial analysis with Nanopore data
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy nanopore … -
slides
Whole transcriptome analysis of Arabidopsis thaliana
• BeginnerTranscriptomics Transcriptomics -
e-learning
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
• BeginnerImaging Bioimaging Data management FAIR Data, Workflows, and Research Metadata -
e-learning
FAIR Bioimage Metadata
• BeginnerImaging Bioimaging Data management FAIR Data, Workflows, and Research Metadata -
elixir-europe/rdmkit
Data management FAIR data Data management FAIR data
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e-learning
End-to-End Tissue Microarray Image Analysis with Galaxy-ME
•• IntermediateImaging Image segmentation Imaging Tissue imaging -
e-learning
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
•• IntermediateGenetic variation Variant Analysis covid19 one-health virology -
e-learning
Generic plugins
• BeginnerSoftware engineering Development in Galaxy