Training materials
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ELIXIR TeSS
e-learning
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy
•• IntermediateImaging Data handling Data management Data sharing Imaging ROI selection -
ELIXIR TeSS
e-learning
Tracking of mitochondria and capturing mitoflashes
•• IntermediateImaging Imaging Isolated object tracking Temporal analysis Time-lapse data -
ELIXIR TeSS
e-learning
16S Microbial analysis with Nanopore data
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy nanopore … -
ELIXIR TeSS
slides
Whole transcriptome analysis of Arabidopsis thaliana
• BeginnerTranscriptomics Transcriptomics -
ELIXIR TeSS
e-learning
End-to-End Tissue Microarray Image Analysis with Galaxy-ME
•• IntermediateImaging Image segmentation Imaging Tissue imaging -
ELIXIR TeSS
e-learning
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
•• IntermediateGenetic variation Variant Analysis covid19 one-health virology -
ELIXIR TeSS
e-learning
Whole transcriptome analysis of Arabidopsis thaliana
• BeginnerTranscriptomics Transcriptomics miRNA plants stress tolerance -
ELIXIR TeSS
e-learning
Analysis of plant scRNA-Seq Data with Scanpy
• BeginnerTranscriptomics 10x Single Cell paper-replication plants -
ELIXIR TeSS
e-learning
Generating a single cell matrix using Alevin
• BeginnerTranscriptomics MIGHTS Single Cell paper-replication -
ELIXIR TeSS
e-learning
Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab
• BeginnerEarth Data science interactive-tools