Training materials
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ELIXIR TeSS
e-learning
Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools
•• IntermediateImaging Conversion Imaging Multi-channel image Object feature extraction ROI selection -
ELIXIR TeSS
e-learning
Prepare Data from CbioPortal for Flexynesis Integration
• BeginnerStatistics and probability Statistics and Machine Learning -
ELIXIR TeSS
e-learning
Unsupervised Analysis of Bone Marrow Cells with Flexynesis
• BeginnerStatistics and probability Statistics and Machine Learning -
ELIXIR TeSS
e-learning
Training Custom YOLO Models for Segmentation of Bioimages
•• IntermediateImaging Deep learning Image annotation Image segmentation Imaging -
ELIXIR TeSS
e-learning
Comparison of two annotation tools - Helixer and Braker3
•• IntermediateGenomics Sequence assembly Braker3 Genome Annotation Helixer biodiversity eukaryota jbrowse1 -
ELIXIR TeSS
e-learning
Life Traits Ecoregionalization workflow
• BeginnerEcology Biodiversity Ecology biodiversity ecoregions life traits -
ELIXIR TeSS
e-learning
Annotate, prepare tests and publish Galaxy workflows in workflow registries
•• IntermediateFAIR Using Galaxy and Managing your Data workflows -
ELIXIR TeSS
e-learning
Voronoi segmentation
•• IntermediateImaging Image segmentation Imaging Multi-channel image Object counting Overlay Tessellation -
ELIXIR TeSS
e-learning
Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy
• BeginnerImaging Image segmentation Imaging Parameter optimisation Validation -
ELIXIR TeSS
e-learning
Using BioImage.IO models for image analysis in Galaxy
•• IntermediateImaging Deep learning Image annotation Image segmentation Imaging