Training materials
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e-learning
Quantitative Analysis of Histological Staining Using Color Deconvolution
• BeginnerImaging Bioimaging Histology Imaging Microscopy pathology -
e-learning
Segmentation of Anatomical Structures in Medical 3-D Images
• BeginnerImaging 3D image Computed tomography Conversion Image segmentation Imaging Medical imaging Object feature extraction Overlay Volume rendering -
e-learning
Where to start with bioimage analysis in Galaxy
• BeginnerImaging Bioimaging Histology Imaging Microscopy -
e-learning
Content Tracking and Verification in Galaxy Workflows with ISCC-SUM
•• IntermediateImaging Data handling Data management Data sharing Imaging Validation -
e-learning
OpenRefine Tutorial for researching cultural data
• BeginnerDigital Humanities -
e-learning
Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools
•• IntermediateImaging Conversion Imaging Multi-channel image Object feature extraction ROI selection -
e-learning
Voronoi segmentation
•• IntermediateImaging Image segmentation Imaging Multi-channel image Object counting Overlay Tessellation -
e-learning
Using BioImage.IO models for image analysis in Galaxy
•• IntermediateImaging Deep learning Image annotation Image segmentation Imaging -
e-learning
Multi-sample batch correction with Harmony and SnapATAC2
•• Intermediate10x Single Cell epigenetics -
e-learning
Pseudobulk Analysis with Decoupler and EdgeR
• BeginnerSingle Cell pseudobulk transcriptomics
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