Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Epidemiology
    • Comparative transcriptomics3
    • Transcriptome3
    • Transcriptomics3
    • Assembly1
    • Biological sequences1
    • Community analysis1
    • Disease1
    • Environmental microbiology1
    • Epigenomics1
    • Metagenomics1
    • Microbial ecology1
    • Microbiome1
    • Molecular community analysis1
    • Pathology1
    • Public health1
    • Public health and epidemiology1
    • Sequence analysis1
    • Sequence assembly1
    • Sequence databases1
    • Shotgun metagenomics1
    • Taxonomy1
    • Show N_FILTERS more
    • Tool
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • BamTools1
    • Bandage1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • FastQC1
    • FastTree1
    • Flye1
    • Galaxy1
    • KrakenTools1
    • MLST1
    • Medaka1
    • Minimap21
    • MultiQC1
    • NanoPlot1
    • Newick Utilities1
    • SAMtools1
    • fastp1
    • ggplot21
    • kraken21
    • taxonomy_krona_chart1
    • Show N_FILTERS more
    • Content provider
    • GTN1
    • Show N_FILTERS more
    • Keyword
    • Heatmap1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • cyoa1
    • microgalaxy1
    • Show N_FILTERS more
    • Competency level
    • Beginner1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International1
    • Show N_FILTERS more
    • Target audience
    • Students1
    • Show N_FILTERS more
    • Author
    • Bérénice Batut1
    • Engy Nasr1
    • Paul Zierep1
    • Show N_FILTERS more
    • Contributor
    • Hans-Rudolf Hotz
    • Björn Grüning6
    • Bérénice Batut6
    • Helena Rasche6
    • Saskia Hiltemann6
    • Canadian Bioinformatics Workshops5
    • Anthony Bretaudeau4
    • Cristóbal Gallardo4
    • Finlay Maguire4
    • Tristan Reynolds4
    • Bazante Sanders3
    • Deepti Varshney3
    • Miaomiao Zhou3
    • Wolfgang Maier3
    • Aaron Petkau2
    • Andrew G. McArthur2
    • Charlie Barclay2
    • Darian2
    • Isabel Cuesta2
    • Jalees A. Nasir2
    • Jared Simpson2
    • Jimmy Liu2
    • Karyn M. Mukiri2
    • Miguel Prieto2
    • Paul Zierep2
    • Sara Monzón2
    • Sarai Varona2
    • pimarin2
    • zhibinlu2
    • Alli Black1
    • Angela McLaughlin1
    • Brett Van Tassel1
    • Chloe Mirzayi1
    • David Bujold1
    • Dillon Barker1
    • EWheeler1231
    • Engy Nasr1
    • GuilleGorines1
    • Gytis Dudas1
    • Heather Gibling1
    • Idowu Olawoye1
    • J. Hector Galvez1
    • Levi Waldron1
    • Linelle Abueg1
    • Matúš Kalaš1
    • Mélanie Petera1
    • Nate Coraor1
    • Neha Ratti1
    • Peter van Heusden1
    • Rhiannon Cameron1
    • Sean Davis1
    • Teresa Müller1
    • Venus Lau1
    • Verena Moosmann1
    • Víctor López1
    • Willem de Koning1
    • annmeyer1
    • bourqueg1
    • edsu71
    • mbilenky1
    • mmiladi1
    • taboadae1
    • Show N_FILTERS more
    • Resource type
    • e-learning1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets1
    • Associated Workflows1
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Epidemiology

and Contributors: Hans-Rudolf Hotz

1 material found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • Beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.