Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Algorithms50
    • Computer programming50
    • Data structures50
    • Programming languages50
    • Software development50
    • Software engineering50
    • Comparative transcriptomics40
    • Transcriptome40
    • Transcriptomics40
    • Biological sequences25
    • Sequence analysis25
    • Sequence databases25
    • Exomes24
    • Genome annotation24
    • Genomes24
    • Genomics24
    • Personal genomics24
    • Synthetic genomics24
    • Viral genomics24
    • Whole genomes24
    • Biodiversity23
    • Computational ecology21
    • Ecoinformatics21
    • Ecological informatics21
    • Ecology21
    • Ecosystem science21
    • Assembly19
    • Sequence assembly19
    • Bayesian methods16
    • Biostatistics16
    • Descriptive statistics16
    • Gaussian processes16
    • Inferential statistics16
    • Markov processes16
    • Multivariate statistics16
    • Probabilistic graphical model16
    • Probability16
    • Statistics16
    • Statistics and probability16
    • Community analysis15
    • Environmental microbiology15
    • Microbial ecology15
    • Microbiome15
    • Molecular community analysis15
    • Metagenomics14
    • Shotgun metagenomics14
    • Antimicrobial stewardship13
    • Epigenomics13
    • Medical microbiology13
    • Microbial genetics13
    • Microbial physiology13
    • Microbial surveillance13
    • Microbiological surveillance13
    • Microbiology13
    • Molecular infection biology13
    • Molecular microbiology13
    • Taxonomy10
    • DNA variation9
    • Genetic variation9
    • Genomic variation9
    • Mutation9
    • Polymorphism9
    • Somatic mutations9
    • Bottom-up proteomics8
    • Discovery proteomics8
    • MS-based targeted proteomics8
    • MS-based untargeted proteomics8
    • Metaproteomics8
    • Peptide identification8
    • Protein and peptide identification8
    • Proteomics8
    • Quantitative proteomics8
    • Targeted proteomics8
    • Top-down proteomics8
    • Evolution7
    • Evolutionary biology7
    • De novo genome sequencing5
    • Epidemiology5
    • Genome sequencing5
    • Public health5
    • Public health and epidemiology5
    • WGS5
    • Whole genome resequencing5
    • Whole genome sequencing5
    • DNA metabarcoding4
    • Data management4
    • Environmental metabarcoding4
    • Exometabolomics4
    • Informatics4
    • Information management4
    • Information science4
    • Knowledge management4
    • LC-MS-based metabolomics4
    • MS-based metabolomics4
    • MS-based targeted metabolomics4
    • MS-based untargeted metabolomics4
    • Mass spectrometry-based metabolomics4
    • Metabarcoding4
    • Metabolites4
    • Metabolome4
    • Show N_FILTERS more
    • Tool
    • Galaxy200
    • FastQC31
    • SAMtools20
    • MultiQC19
    • BWA15
    • BEDTools14
    • SCANPY12
    • DeepTools11
    • Falco11
    • scikit-learn11
    • Cutadapt10
    • fastp9
    • GEMINI8
    • NanoPlot8
    • QUAST8
    • taxonomy_krona_chart8
    • Bandage7
    • JBrowse7
    • BamTools6
    • FreeBayes6
    • FASTX-Toolkit5
    • Flye5
    • MetaPhlAn5
    • STAR5
    • Trim Galore5
    • Trimmomatic5
    • Unicycler5
    • BLAST4
    • Biopython4
    • MACS4
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
    • Salmon4
    • anndata4
    • ggplot24
    • mothur4
    • seqtk4
    • snpEff4
    • BCFtools3
    • BUSCO3
    • Bowtie 23
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DESeq23
    • Diamond3
    • DropletUtils3
    • Galactic Circos3
    • GraPhlAn3
    • HISAT23
    • KrakenTools3
    • Newick Utilities3
    • RSeQC3
    • RStudio3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
    • annotatemyids3
    • bx-python3
    • export2graphlan3
    • humann3
    • kraken23
    • Bakta2
    • Bracken2
    • Bwa-mem22
    • Cardinal2
    • ChIPpeakAnno2
    • Combine Metaphlan and HUMAnN2
    • FASTQE2
    • GECKO2
    • GOEnrichment2
    • GOseq2
    • HUMAnN22
    • Heinz2
    • JBrowse 22
    • MAGeCK2
    • MEME2
    • Medaka2
    • Minimap22
    • Racon2
    • RepeatMasker2
    • SPAdes2
    • SRA Software Toolkit2
    • Targetfinder.org2
    • UCSC Genome Browser Utilities2
    • UMI-tools2
    • Vcflib2
    • VelvetOptimiser2
    • Workflow4Metabolomics2
    • clusterProfiler2
    • ewastools2
    • lofreq2
    • miRDeep22
    • pilon2
    • pyGenomeTracks2
    • pycoQC2
    • staramr2
    • tbl2gff32
    • ABRicate1
    • Alevin1
    • Apollo1
    • Bowtie1
    • ChEMBL1
    • Show N_FILTERS more
    • Content provider
    • GTN411
    • Show N_FILTERS more
    • Keyword
    • Galaxy Server administration62
    • Single Cell34
    • Development in Galaxy26
    • microgalaxy25
    • Transcriptomics24
    • biodiversity24
    • jupyter-notebook24
    • Contributing to the Galaxy Training Material22
    • Ecology21
    • FAIR Data, Workflows, and Research21
    • Foundations of Data Science21
    • ansible18
    • git-gat18
    • Statistics and machine learning16
    • Using Galaxy and Managing your Data16
    • interactive-tools16
    • Assembly15
    • Climate15
    • Genome Annotation15
    • Introduction to Galaxy Analyses15
    • fair15
    • Microbiome14
    • Epigenetics13
    • paper-replication12
    • prokaryote12
    • MIGHTS11
    • earth-system11
    • Teaching and Hosting Galaxy training10
    • Variant Analysis9
    • data stewardship9
    • Proteomics8
    • Sequence analysis8
    • gmod8
    • EBV dataset7
    • EBV workflow7
    • Evolution7
    • dmp7
    • jbrowse17
    • work-in-progress7
    • assembly6
    • covid196
    • cyoa6
    • data management6
    • deploying6
    • jobs6
    • nanopore6
    • ocean6
    • plants6
    • Galaxy Community Building5
    • elixir5
    • español5
    • illumina5
    • train-the-trainers5
    • 10x4
    • DDA4
    • Metabolomics4
    • Visualisation4
    • deutsch4
    • ecology4
    • genetic composition EBV class4
    • italiano4
    • metabarcoding4
    • mouse4
    • pangeo4
    • ro-crate4
    • workflows4
    • 16S3
    • ChIP-seq3
    • FAIR3
    • QC3
    • RAD-seq3
    • amr3
    • bacteria3
    • climate3
    • data import3
    • eukaryote3
    • gbif3
    • metagenomics3
    • metatranscriptomics3
    • modeling3
    • monitoring3
    • one-health3
    • open3
    • rmarkdown-notebook3
    • species populations EBV class3
    • transcriptomics3
    • Bioimaging2
    • Data management2
    • EML2
    • FAIR Data2
    • Metadata2
    • R2
    • SQL2
    • Synthetic Biology2
    • Workflows2
    • and Research2
    • collections2
    • community composition EBV class2
    • data paper2
    • deep-learning2
    • Show N_FILTERS more
    • Competency level
    • Beginner
    • Intermediate74
    • Advanced12
    • Not specified4
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International411
    • Show N_FILTERS more
    • Target audience
    • Students286
    • Galaxy Administrators88
    • Instructors37
    • Show N_FILTERS more
    • Author
    • Helena Rasche86
    • Bérénice Batut66
    • Saskia Hiltemann44
    • Björn Grüning34
    • Simon Gladman29
    • Nate Coraor24
    • Nicola Soranzo23
    • Anton Nekrutenko18
    • Yvan Le Bras18
    • Wendi Bacon17
    • Katarzyna Kamieniecka16
    • Krzysztof Poterlowicz16
    • Anne Fouilloux15
    • Marie Josse15
    • Mehmet Tekman15
    • Anthony Bretaudeau14
    • Bazante Sanders14
    • Julia Jakiela12
    • Maria Doyle12
    • The Carpentries12
    • Fotis E. Psomopoulos11
    • Dave Clements10
    • Donny Vrins10
    • Martin Čech10
    • Pavankumar Videm10
    • Khaled Jum'ah9
    • Marius van den Beek9
    • Anika Erxleben8
    • Cristóbal Gallardo8
    • Daniel Blankenberg8
    • Joachim Wolff7
    • Kaivan Kamali7
    • Laura Cooper7
    • Lucille Delisle7
    • Paul Zierep7
    • Robert Andrews7
    • Andrew Mason6
    • Anna Syme6
    • Anne Pajon6
    • Anup Kumar6
    • Branka Franicevic6
    • Clemens Blank6
    • Coline Royaux6
    • John Chilton6
    • Michael Charleston6
    • Philippe Rocca-Serra6
    • Sara Morsy6
    • Wolfgang Maier6
    • Xenia Perez Sitja6
    • Alex Ostrovsky5
    • Alexandre Cormier5
    • Allegra Via5
    • Delphine Lariviere5
    • ELIXIR Goblet Train the Trainers5
    • Kellie Snow5
    • Korneel Hens5
    • Laura Leroi5
    • Melanie Föll5
    • Mira Kuntz5
    • Munazah Andrabi5
    • Nick Juty5
    • Patricia Palagi5
    • Pratik Jagtap5
    • Saskia Lawson-Tovey5
    • Subina Mehta5
    • Cyril Monjeaud4
    • Erwan Corre4
    • Florian Heyl4
    • Mallory Freeberg4
    • Morgan Howells4
    • Simon Bray4
    • Stéphanie Robin4
    • Tristan Reynolds4
    • Vivek Bhardwaj4
    • Youri Hoogstrate4
    • Andrea Bagnacani3
    • Avans Hogeschool3
    • Belinda Phipson3
    • Dannon Baker3
    • Emma Leith3
    • Engy Nasr3
    • Fidel Ramirez3
    • Florian Christoph Sigloch3
    • Gianmauro Cuccuru3
    • Gildas Le Corguillé3
    • Hans-Rudolf Hotz3
    • John Davis3
    • Laila Los3
    • Marisa Loach3
    • Mateo Boudet3
    • Mirela Minkova3
    • Mo Heydarian3
    • Ross Lazarus3
    • Simone Leo3
    • Sofoklis Keisaris3
    • Torsten Seemann3
    • Alireza Khanteymoori2
    • Anne Siegel2
    • Aysam Guerler2
    • Beatriz Serrano-Solano2
    • Show N_FILTERS more
    • Contributor
    • Helena Rasche
    • Saskia Hiltemann472
    • Björn Grüning333
    • Bérénice Batut199
    • Nicola Soranzo157
    • Martin Čech116
    • Cristóbal Gallardo90
    • Niall Beard83
    • Anthony Bretaudeau77
    • Nate Coraor66
    • Wendi Bacon65
    • Armin Dadras56
    • Gildas Le Corguillé55
    • William Durand54
    • Simon Gladman50
    • Marius van den Beek45
    • Mehmet Tekman44
    • Lucille Delisle42
    • Teresa Müller42
    • Yvan Le Bras42
    • Marie Josse36
    • Pavankumar Videm36
    • Beatriz Serrano-Solano29
    • Wolfgang Maier26
    • Maria Doyle22
    • Anne Fouilloux21
    • Anup Kumar20
    • Julia Jakiela20
    • Khaled Jum'ah17
    • Tristan Reynolds17
    • Melanie Föll16
    • Petros Kountouris16
    • Subina Mehta16
    • Paul Zierep15
    • Pratik Jagtap15
    • Simon Bray15
    • Deepti Varshney14
    • Donny Vrins14
    • Marisa Loach14
    • Bazante Sanders13
    • David López13
    • Mira Kuntz13
    • Anton Nekrutenko12
    • Delphine Lariviere12
    • Matthias Bernt12
    • Pablo Moreno12
    • Timothy J. Griffin12
    • Daniela Schneider11
    • Gianmauro Cuccuru11
    • Katarzyna Kamieniecka11
    • Mélanie Petera11
    • Peter van Heusden11
    • Paul De Geest9
    • Elin Kronander8
    • John Chilton8
    • Kaivan Kamali8
    • Leonid Kostrykin8
    • Verena Moosmann8
    • Wolmar Nyberg Åkerström8
    • Amirhossein Naghsh Nilchi7
    • Anna Syme7
    • Florian Heyl7
    • Hans-Rudolf Hotz7
    • Katherine Do7
    • Markus Englund7
    • Mattias Strömberg7
    • Melissa Burke7
    • Morgan Howells7
    • Niclas Jareborg7
    • Stephan Nylinder7
    • Tomas Klingström7
    • Yvonne Kallberg7
    • Alexandre Cormier6
    • Dave Clements6
    • Ekaterina Polkh6
    • Erik Hedman6
    • Mallory Freeberg6
    • Sabine Österle6
    • Solenne Correard6
    • Alex Ostrovsky5
    • Alireza Khanteymoori5
    • Bert Droesbeke5
    • Catherine Bromhead5
    • Diana Chiang Jurado5
    • John Davis5
    • Stéphanie Robin5
    • Vassilios Ioannidis5
    • Andrea Bagnacani4
    • Clea Siguret4
    • Coline Royaux4
    • Daniel Sobral4
    • Dave B.4
    • Eli Chadwick4
    • Enis Afgan4
    • Fotis E. Psomopoulos4
    • Phil Reed4
    • Pinar Alper4
    • Sotiroula Chatzimatthaiou4
    • Tim Beck4
    • Alexander Botzki3
    • Show N_FILTERS more
    • Resource type
    • e-learning310
    • slides101
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets184
    • Associated Workflows177
    • Jupyter Notebook (with Solutions)23
    • Jupyter Notebook (without Solutions)23
    • Quarto/RMarkdown Notebook3
    • Show N_FILTERS more
    • Collection
    • ELIXIR Biodiversity Community4
    • 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
    • ELIXIR hCNV community - collection of courses and materials.1
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Competency level: Beginner

and Contributors: Helena Rasche

411 materials found
  • e-learning

    Screening assembled genomes for contamination using NCBI FCS

    • Beginner
    Sequence analysis Sequence analysis
  • e-learning

    Scanpy Parameter Iterator

    • Beginner
    Single Cell
  • e-learning

    CUT&RUN data analysis

    • Beginner
    Epigenomics Epigenetics
  • e-learning

    A (very) brief history of genomics

    • Beginner
    Software engineering Foundations of Data Science
  • e-learning

    IGV Introduction

    • Beginner
    Introduction to Galaxy Analyses
  • e-learning

    Very Short Introductions: QC

    • Beginner
    Introduction to Galaxy Analyses
  • slides

    Identification of non-canonical ORFs and their potential biological function

    • Beginner
    Transcriptomics Transcriptomics
  • slides

    Whole transcriptome analysis of Arabidopsis thaliana

    • Beginner
    Transcriptomics Transcriptomics
  • slides

    Workshop Kickoff

    • Beginner
    Teaching and Hosting Galaxy training
  • slides

    Overview of the Galaxy Training Material

    • Beginner
    Contributing to the Galaxy Training Material
  • 1
  • 2
  • 3
  • 4
  • 5
  • 6
  • 7
  • 8
  • 9
  • 10
  • 11
  • 12
  • …
  • 41
  • 42
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.