Training materials
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e-learning
Identification of the micro-organisms in a beer using Nanopore sequencing
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome beer citizen science metagenomics microgalaxy nanopore -
e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• BeginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
e-learning
Very Short Introductions: QC
• BeginnerIntroduction to Galaxy Analyses -
slides
Identification of non-canonical ORFs and their potential biological function
• BeginnerTranscriptomics Transcriptomics -
e-learning
Large genome assembly and polishing
• BeginnerSequence assembly Genomics Biodiversity Assembly assembly biodiversity nanopore plants polishing -
e-learning
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• BeginnerGenetic variation Variant Analysis covid19 one-health virology -
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• BeginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
e-learning
NGS data logistics
• BeginnerIntroduction to Galaxy Analyses -
slides
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
• BeginnerSequence assembly Assembly covid19