Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • Spaces
  • Events
  • Materials
  • Workflows
  • Collections
  • e-Learning
  • Learning paths
  • Directory
    • Providers
    • Nodes

TeSSHub makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSSHub in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Comparative transcriptomics43
    • Transcriptome43
    • Transcriptomics43
    • Algorithms42
    • Computer programming42
    • Data structures42
    • Programming languages42
    • Software development42
    • Software engineering42
    • Exomes36
    • Genome annotation36
    • Genomes36
    • Genomics36
    • Personal genomics36
    • Synthetic genomics36
    • Viral genomics36
    • Whole genomes36
    • Biodiversity28
    • Assembly27
    • Sequence assembly27
    • Biological sequences26
    • Sequence analysis26
    • Sequence databases26
    • Bottom-up proteomics24
    • Discovery proteomics24
    • MS-based targeted proteomics24
    • MS-based untargeted proteomics24
    • Metaproteomics24
    • Peptide identification24
    • Protein and peptide identification24
    • Proteomics24
    • Quantitative proteomics24
    • Targeted proteomics24
    • Top-down proteomics24
    • Computational ecology21
    • Ecoinformatics21
    • Ecological informatics21
    • Ecology21
    • Ecosystem science21
    • Bayesian methods19
    • Biostatistics19
    • Descriptive statistics19
    • Gaussian processes19
    • Inferential statistics19
    • Markov processes19
    • Multivariate statistics19
    • Probabilistic graphical model19
    • Probability19
    • Statistics19
    • Statistics and probability19
    • Antimicrobial stewardship16
    • Community analysis16
    • Environmental microbiology16
    • Medical microbiology16
    • Microbial ecology16
    • Microbial genetics16
    • Microbial physiology16
    • Microbial surveillance16
    • Microbiological surveillance16
    • Microbiology16
    • Microbiome16
    • Molecular community analysis16
    • Molecular infection biology16
    • Molecular microbiology16
    • Metagenomics15
    • Shotgun metagenomics15
    • DNA variation14
    • Genetic variation14
    • Genomic variation14
    • Mutation14
    • Polymorphism14
    • Somatic mutations14
    • Epigenomics13
    • Taxonomy11
    • Computational chemistry9
    • Diffraction experiment8
    • Evolution8
    • Evolutionary biology8
    • Imaging8
    • Microscopy8
    • Microscopy imaging8
    • Optical super resolution microscopy8
    • Photonic force microscopy8
    • Photonic microscopy8
    • Epidemiology6
    • Exometabolomics6
    • LC-MS-based metabolomics6
    • MS-based metabolomics6
    • MS-based targeted metabolomics6
    • MS-based untargeted metabolomics6
    • Mass spectrometry-based metabolomics6
    • Metabolites6
    • Metabolome6
    • Metabolomics6
    • Metabonomics6
    • NMR-based metabolomics6
    • Public health6
    • Public health and epidemiology6
    • Communicable disease5
    • De novo genome sequencing5
    • Show N_FILTERS more
    • Tool
    • Galaxy257
    • FastQC34
    • SAMtools24
    • MultiQC21
    • BWA16
    • BEDTools15
    • JBrowse13
    • SCANPY13
    • fastp13
    • QUAST12
    • Cutadapt11
    • DeepTools11
    • Falco11
    • scikit-learn11
    • GEMINI9
    • NanoPlot9
    • BUSCO8
    • taxonomy_krona_chart8
    • BamTools7
    • Bandage7
    • FreeBayes7
    • STAR7
    • ggplot27
    • BCFtools6
    • Flye6
    • Trimmomatic6
    • Unicycler6
    • BLAST5
    • Biopython5
    • FASTX-Toolkit5
    • HISAT25
    • MetaPhlAn5
    • Open Babel5
    • RSeQC5
    • RStudio5
    • Trim Galore5
    • msConvert5
    • seqtk5
    • Galactic Circos4
    • MACS4
    • MaxQuant4
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
    • Salmon4
    • The Protein Data Bank (PDB)4
    • UniProt4
    • Workflow4Metabolomics4
    • anndata4
    • annotatemyids4
    • gffread4
    • mothur4
    • snpEff4
    • Apollo3
    • Bowtie 23
    • Bwa-mem23
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DESeq23
    • Diamond3
    • DropletUtils3
    • GOseq3
    • Galaxy Image Analysis3
    • GraPhlAn3
    • KrakenTools3
    • MAFFT3
    • Merqury3
    • Minimap23
    • Newick Utilities3
    • QualiMap3
    • RDKit3
    • SRA Software Toolkit3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
    • StringTie3
    • UCSC Genome Browser Utilities3
    • bx-python3
    • export2graphlan3
    • gffcompare3
    • humann3
    • kraken23
    • lofreq3
    • pyGenomeTracks3
    • scikit-image3
    • snippy3
    • xcms3
    • Bakta2
    • Bio3D2
    • Bracken2
    • COMBAT-TB Workbench2
    • Cardinal2
    • CellProfiler2
    • ChEMBL2
    • ChIPpeakAnno2
    • Combine Metaphlan and HUMAnN2
    • FASTQE2
    • FeatureCounts2
    • GECKO2
    • GOEnrichment2
    • GenomeScope 2.02
    • Gromacs2
    • HUMAnN22
    • Show N_FILTERS more
    • Content provider
    • GTN378
    • PaN Training3
    • Show N_FILTERS more
    • Keyword
    • Foundations of Data Science41
    • jupyter-notebook40
    • Single Cell35
    • biodiversity33
    • microgalaxy30
    • Transcriptomics26
    • Proteomics24
    • Using Galaxy and Managing your Data24
    • Genome Annotation23
    • Assembly21
    • Ecology21
    • FAIR Data, Workflows, and Research20
    • Statistics and Machine Learning18
    • Earth Data Science15
    • Introduction to Galaxy Analyses15
    • Microbiome15
    • fair15
    • prokaryote15
    • Variant Analysis14
    • gmod14
    • interactive-tools14
    • jbrowse114
    • Epigenetics13
    • paper-replication12
    • MIGHTS11
    • covid1910
    • eukaryote10
    • Computational Chemistry9
    • data stewardship9
    • earth-system9
    • one-health9
    • Evolution8
    • Sequence Analysis8
    • assembly8
    • EBV dataset7
    • EBV workflow7
    • cyoa7
    • dmp7
    • work-in-progress7
    • workflows7
    • DDA6
    • Imaging6
    • Metabolomics6
    • SQL6
    • Visualisation6
    • collections6
    • data management6
    • nanopore6
    • ocean6
    • plants6
    • 10x5
    • R5
    • español5
    • illumina5
    • label-TMT115
    • metabolomics5
    • rmarkdown-notebook5
    • FAIR Data4
    • Image segmentation4
    • Workflows4
    • and Research4
    • deconvolution4
    • deutsch4
    • ecology4
    • genetic composition EBV class4
    • italiano4
    • metabarcoding4
    • metagenomics4
    • mouse4
    • pangeo4
    • ro-crate4
    • virology4
    • 16S3
    • ChIP-seq3
    • FAIR3
    • QC3
    • RAD-seq3
    • amr3
    • apollo23
    • bacteria3
    • bash3
    • climate3
    • data import3
    • galaxy-intro3
    • gbif3
    • lc-ms3
    • metatranscriptomics3
    • modeling3
    • open3
    • pacbio3
    • proteogenomics3
    • sc_formats3
    • single-cell3
    • species populations EBV class3
    • transcriptomics3
    • Bioimaging2
    • Data management2
    • EML2
    • Fluorescence microscopy2
    • GIS2
    • Show N_FILTERS more
    • Competency level
    • Beginner293
    • Intermediate73
    • Advanced11
    • Not specified4
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International381
    • Show N_FILTERS more
    • Target audience
    • Students
    • Galaxy Administrators90
    • Instructors38
    • Show N_FILTERS more
    • Author
    • Helena Rasche58
    • Bérénice Batut41
    • Saskia Hiltemann29
    • Anton Nekrutenko23
    • The Carpentries23
    • Anthony Bretaudeau21
    • Bazante Sanders18
    • Anne Fouilloux17
    • Yvan Le Bras17
    • Katarzyna Kamieniecka16
    • Krzysztof Poterlowicz16
    • Mehmet Tekman16
    • Björn Grüning15
    • Nicola Soranzo15
    • Subina Mehta14
    • Donny Vrins13
    • Simon Gladman13
    • Wendi Bacon13
    • Julia Jakiela12
    • Maria Doyle12
    • Marie Josse12
    • Cristóbal Gallardo11
    • Dave Clements11
    • Simon Bray11
    • Wolfgang Maier11
    • Pavankumar Videm10
    • Avans Hogeschool9
    • Delphine Lariviere9
    • Fotis E. Psomopoulos9
    • Khaled Jum'ah9
    • Pratik Jagtap9
    • Anika Erxleben8
    • Anne Pajon8
    • Alexandre Cormier7
    • Anna Syme7
    • Christopher Barnett7
    • Daniel Blankenberg7
    • Florian Christoph Sigloch7
    • Joachim Wolff7
    • Kaivan Kamali7
    • Laura Cooper7
    • Laura Leroi7
    • Robert Andrews7
    • Stéphanie Robin7
    • Alex Ostrovsky6
    • Andrew Mason6
    • Anup Kumar6
    • Branka Franicevic6
    • Coline Royaux6
    • Erwan Corre6
    • Marius van den Beek6
    • Melanie Föll6
    • Michael Charleston6
    • Paul Zierep6
    • Philippe Rocca-Serra6
    • Sara Morsy6
    • Timothy J. Griffin6
    • Xenia Perez Sitja6
    • Dechen Bhuming5
    • James Johnson5
    • Katherine Do5
    • Kellie Snow5
    • Korneel Hens5
    • Munazah Andrabi5
    • Nadia Goué5
    • Nick Juty5
    • Praveen Kumar5
    • Ray Sajulga5
    • Saskia Lawson-Tovey5
    • Andrea Bagnacani4
    • Beatriz Serrano-Solano4
    • Clemens Blank4
    • Emma Leith4
    • Florian Heyl4
    • Gildas Le Corguillé4
    • Lucille Delisle4
    • Mallory Freeberg4
    • Mateo Boudet4
    • Morgan Howells4
    • Tristan Reynolds4
    • Vivek Bhardwaj4
    • Belinda Phipson3
    • Diana Chiang Jurado3
    • Engy Nasr3
    • Fidel Ramirez3
    • Leonid Kostrykin3
    • Maria Christina Maniou3
    • Marisa Loach3
    • Matthias Fahrner3
    • Michele Maroni3
    • Mo Heydarian3
    • Mélanie Petera3
    • Olha Nahorna3
    • Simone Leo3
    • Sofoklis Keisaris3
    • Tharindu Senapathi3
    • Toby Hodges3
    • Torsten Seemann3
    • Workflow4Metabolomics core team3
    • Alireza Khanteymoori2
    • Show N_FILTERS more
    • Contributor
    • Helena Rasche
    • Saskia Hiltemann462
    • Björn Grüning333
    • Bérénice Batut191
    • Nicola Soranzo89
    • Anthony Bretaudeau79
    • Cristóbal Gallardo79
    • Pavankumar Videm66
    • Wendi Bacon58
    • Martin Čech56
    • Niall Beard55
    • Armin Dadras47
    • Beatriz Serrano-Solano46
    • Teresa Müller46
    • William Durand43
    • Mehmet Tekman42
    • Yvan Le Bras41
    • Gildas Le Corguillé40
    • Melanie Föll35
    • Anup Kumar34
    • Subina Mehta33
    • Wolfgang Maier32
    • Marius van den Beek30
    • Marie Josse29
    • Simon Bray24
    • Anne Fouilloux23
    • Donny Vrins23
    • Maria Doyle22
    • Nate Coraor22
    • Peter van Heusden22
    • Tristan Reynolds21
    • Leonid Kostrykin20
    • Anton Nekrutenko18
    • Bazante Sanders18
    • Julia Jakiela18
    • Khaled Jum'ah18
    • Deepti Varshney17
    • Lucille Delisle17
    • Petros Kountouris16
    • Pratik Jagtap16
    • Paul Zierep15
    • Daniela Schneider14
    • Delphine Lariviere14
    • Diana Chiang Jurado13
    • David López12
    • Marisa Loach12
    • Mélanie Petera12
    • Timothy J. Griffin12
    • Dave Clements11
    • Katarzyna Kamieniecka11
    • Matthias Bernt11
    • Pablo Moreno11
    • Stéphanie Robin11
    • Simon Gladman10
    • Amirhossein Naghsh Nilchi9
    • Anna Syme9
    • Mallory Freeberg9
    • Alexandre Cormier8
    • Florian Heyl8
    • Kaivan Kamali8
    • Verena Moosmann8
    • Christopher Barnett7
    • Katherine Do7
    • Melissa Burke7
    • Morgan Howells7
    • Paulo Cilas Morais Lyra Junior7
    • Clemens Blank6
    • Ekaterina Polkh6
    • Florian Christoph Sigloch6
    • Hans-Rudolf Hotz6
    • Alireza Khanteymoori5
    • Bert Droesbeke5
    • Clea Siguret5
    • Fabio Cumbo5
    • Linelle Abueg5
    • Riccardo Massei5
    • Wandrille Duchemin5
    • olisand5
    • Andrea Bagnacani4
    • Coline Royaux4
    • Fotis E. Psomopoulos4
    • Joachim Wolff4
    • Laura Leroi4
    • Nadia Goué4
    • Natalie Whitaker-Allen4
    • Romane LIBOUBAN4
    • Solenne Correard4
    • Sotiroula Chatzimatthaiou4
    • Anika Erxleben3
    • Arthur Barreau3
    • Eli Chadwick3
    • Engy Nasr3
    • Enis Afgan3
    • Erwan Corre3
    • Jasper Ouwerkerk3
    • Jennifer Hillman-Jackson3
    • Kenza Bazi-Kabbaj3
    • Krzysztof Poterlowicz3
    • Maria Christina Maniou3
    • Martijn Kersloot3
    • Show N_FILTERS more
    • Resource type
    • e-learning315
    • slides65
    • hands-on tutorial1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets237
    • Associated Workflows228
    • Jupyter Notebook (with Solutions)36
    • Jupyter Notebook (without Solutions)36
    • Quarto/RMarkdown Notebook5
    • Show N_FILTERS more
    • Collection
    • ELIXIR Biodiversity Community4
    • 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
    • ELIXIR hCNV community - collection of courses and materials.1
    • ELIXIR Federated Human Data Community1
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email
  • Harvest using OAI-PMH

Email Subscription

Harvest using OAI-PMH

Exchange content using OAI-PMH

Use an OAI-PMH compatible tool to harvest metadata using the OAI-PMH endpoint. In particular, this endpoint can be used for exchanging content between different TeSS instances. See the TeSS documentation for more details.

Target audience: Students

and Contributors: Helena Rasche

381 materials found
  • ELIXIR TeSS

    slides

    Getting data into Galaxy

    • Beginner
    Using Galaxy and Managing your Data
  • ELIXIR TeSS

    slides

    A Short Introduction to Galaxy

    • Beginner
    Introduction to Galaxy Analyses
  • ELIXIR TeSS

    slides

    Galaxy workflows in Dockstore

    • Beginner
    Using Galaxy and Managing your Data
  • ELIXIR TeSS

    slides

    Options for using Galaxy

    • Beginner
    Introduction to Galaxy Analyses
  • ELIXIR TeSS

    slides

    Introduction to 'Genome Annotation'

    •• Intermediate
  • ELIXIR TeSS

    slides

    Introduction to 'Galaxy Server administration'

  • ELIXIR TeSS

    slides

    Introduction to 'Introduction to Galaxy Analyses'

  • ELIXIR TeSS

    e-learning

    Mapping

    • Beginner
    Sequence analysis Mapping Sequence Analysis deutsch español italiano
  • ELIXIR TeSS

    e-learning

    Quality Control

    • Beginner
    Sequence analysis Sequence Analysis deutsch español italiano
  • ELIXIR TeSS

    slides

    Mapping

    • Beginner
    Sequence analysis Sequence Analysis
  • 1
  • 2
  • …
  • 31
  • 32
  • 33
  • 34
  • 35
  • 36
  • 37
  • 38
  • 39
Training eSupport System
[email protected]
Contribute
About TeSSHub
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSSHub has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.