Training materials
Scientific topics: Exomes
and Contributors: Helena Rasche
and Related resources: Associated Workflows
32 materials found
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ELIXIR TeSS
e-learning
Genome annotation with Helixer
•• IntermediateGenomics Biodiversity Zoology Plant biology Genome Annotation biodiversity eukaryota helixer jbrowse1 -
ELIXIR TeSS
e-learning
Checking expected species and contamination in bacterial isolate
• BeginnerEcology Biodiversity Whole genome sequencing Genomics Microbiology Microbial ecology Ecology bacteria illumina microgalaxy -
ELIXIR TeSS
e-learning
Identification of AMR genes in an assembled bacterial genome
• BeginnerGenomics Whole genome sequencing Public health and epidemiology Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod … -
ELIXIR TeSS
e-learning
Bacterial Genome Annotation
• BeginnerGenomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod … -
ELIXIR TeSS
e-learning
Large genome assembly and polishing
• BeginnerSequence assembly Genomics Biodiversity Assembly assembly biodiversity nanopore plants polishing -
ELIXIR TeSS
e-learning
Long non-coding RNAs (lncRNAs) annotation with FEELnc
•• IntermediateGenomics Genome Annotation eukaryote -
ELIXIR TeSS
e-learning
Comparative gene analysis in unannotated genomes
• BeginnerGenomics Gene and protein families Sequence analysis Phylogeny Comparative genomics Genome Annotation annotation biodiversity cookbook eukaryote … -
ELIXIR TeSS
e-learning
M. tuberculosis Variant Analysis
•• IntermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote … -
ELIXIR TeSS
e-learning
Microbial Variant Calling
• BeginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy … -
ELIXIR TeSS
e-learning
Calling variants in non-diploid systems
• BeginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote