Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Comparative transcriptomics1
    • DNA variation1
    • Genetic variation1
    • Genomic variation1
    • Mutation1
    • Polymorphism1
    • Somatic mutations1
    • Transcriptome1
    • Transcriptomics1
    • Show N_FILTERS more
    • Tool
    • SRA Software Toolkit
    • Galaxy255
    • FastQC34
    • SAMtools24
    • MultiQC21
    • BWA18
    • BEDTools15
    • JBrowse13
    • SCANPY13
    • fastp13
    • Cutadapt12
    • QUAST12
    • DeepTools11
    • Falco11
    • scikit-learn11
    • GEMINI9
    • NanoPlot9
    • BUSCO8
    • taxonomy_krona_chart8
    • BamTools7
    • Bandage7
    • FreeBayes7
    • STAR7
    • BCFtools6
    • Flye6
    • Trimmomatic6
    • Unicycler6
    • ggplot26
    • seqtk6
    • BLAST5
    • Biopython5
    • FASTX-Toolkit5
    • HISAT25
    • MetaPhlAn5
    • Open Babel5
    • RSeQC5
    • RStudio5
    • Trim Galore5
    • Galactic Circos4
    • MACS4
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
    • Salmon4
    • The Protein Data Bank (PDB)4
    • Workflow4Metabolomics4
    • anndata4
    • annotatemyids4
    • gffread4
    • mothur4
    • msConvert4
    • snpEff4
    • Apollo3
    • Bowtie 23
    • Bwa-mem23
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DESeq23
    • Diamond3
    • DropletUtils3
    • GOseq3
    • Galaxy Image Analysis3
    • GraPhlAn3
    • KrakenTools3
    • MAFFT3
    • Merqury3
    • Minimap23
    • Newick Utilities3
    • QualiMap3
    • RDKit3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
    • StringTie3
    • UCSC Genome Browser Utilities3
    • bx-python3
    • export2graphlan3
    • gffcompare3
    • humann3
    • kraken23
    • lofreq3
    • pyGenomeTracks3
    • scikit-image3
    • snippy3
    • xcms3
    • Bakta2
    • Bio3D2
    • Bracken2
    • COMBAT-TB Workbench2
    • Cardinal2
    • CellProfiler2
    • ChEMBL2
    • ChIPpeakAnno2
    • Combine Metaphlan and HUMAnN2
    • FASTQE2
    • FeatureCounts2
    • GECKO2
    • GOEnrichment2
    • GenomeScope 2.02
    • Gromacs2
    • HUMAnN22
    • Heinz2
    • InterProScan (EBI)2
    • Show N_FILTERS more
    • Content provider
    • GTN3
    • Show N_FILTERS more
    • Keyword
    • Introduction to Galaxy Analyses1
    • Transcriptomics1
    • Variant Analysis1
    • bulk1
    • covid191
    • cyoa1
    • one-health1
    • rna-seq1
    • virology1
    • viz1
    • Show N_FILTERS more
    • Competency level
    • Beginner2
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Anton Nekrutenko2
    • Daniel Blankenberg2
    • Dave Clements2
    • Marius van den Beek2
    • Helena Rasche1
    • Iacopo Cristoferi1
    • Marek Ostaszewski1
    • Matti Hoch1
    • Myrthe van Baardwijk1
    • Saskia Hiltemann1
    • Show N_FILTERS more
    • Contributor
    • Helena Rasche
    • Björn Grüning4
    • Saskia Hiltemann4
    • Wolfgang Maier3
    • Anton Nekrutenko2
    • Bérénice Batut2
    • Nicola Soranzo2
    • Armin Dadras1
    • Giuseppe Defazio1
    • John Davis1
    • José Manuel Domínguez1
    • Jörg Wennmann1
    • Linelle Abueg1
    • Matti Hoch1
    • Mehmet Tekman1
    • Mira Kuntz1
    • Mélanie Petera1
    • Natalie Whitaker-Allen1
    • Niall Beard1
    • Paul Zierep1
    • Sanjay Kumar Srikakulam1
    • Teresa Müller1
    • William Durand1
    • Show N_FILTERS more
    • Resource type
    • e-learning3
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows3
    • Associated Training Datasets2
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: SRA Software Toolkit

and Contributors: Helena Rasche

3 materials found
  • e-learning

    Pathway analysis with the MINERVA Platform

    •• Intermediate
    Transcriptomics Transcriptomics bulk cyoa rna-seq viz
  • e-learning

    From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis

    • Beginner
    Genetic variation Variant Analysis covid19 one-health virology
  • e-learning

    NGS data logistics

    • Beginner
    Introduction to Galaxy Analyses
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.