Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Comparative transcriptomics5
    • Transcriptome5
    • Transcriptomics5
    • Assembly4
    • Biological sequences4
    • Sequence analysis4
    • Sequence assembly4
    • Sequence databases4
    • Antimicrobial stewardship3
    • Exomes3
    • Genome annotation3
    • Genomes3
    • Genomics3
    • Medical microbiology3
    • Microbial genetics3
    • Microbial physiology3
    • Microbial surveillance3
    • Microbiological surveillance3
    • Microbiology3
    • Molecular infection biology3
    • Molecular microbiology3
    • Personal genomics3
    • Synthetic genomics3
    • Viral genomics3
    • Whole genomes3
    • DNA variation2
    • Epigenomics2
    • Genetic variation2
    • Genomic variation2
    • Mutation2
    • Polymorphism2
    • Somatic mutations2
    • ChIP-exo1
    • ChIP-seq1
    • ChIP-sequencing1
    • Chip Seq1
    • Chip sequencing1
    • Chip-sequencing1
    • DNA polymorphism1
    • Gene and protein families1
    • Gene families1
    • Gene family1
    • Gene system1
    • Genes, gene family or system1
    • Genetic linkage1
    • Linkage1
    • Linkage mapping1
    • Mapping1
    • Microsatellites1
    • Protein families1
    • Protein sequence classification1
    • RFLP1
    • SNP1
    • Single nucleotide polymorphism1
    • Synteny1
    • VNTR1
    • Variable number of tandem repeat polymorphism1
    • snps1
    • Show N_FILTERS more
    • Tool
    • Galaxy
    • FastQC5
    • SAMtools4
    • BEDTools3
    • BWA3
    • Cutadapt2
    • DeepTools2
    • JBrowse2
    • MultiQC2
    • RSeQC2
    • bx-python2
    • BamTools1
    • Bandage1
    • Circos1
    • DESeq21
    • FASTQE1
    • FASTX-Toolkit1
    • Falco1
    • FeatureCounts1
    • FreeBayes1
    • GOEnrichment1
    • GOseq1
    • Galactic Circos1
    • HISAT21
    • Heinz1
    • NanoPlot1
    • QUAST1
    • R1
    • SPAdes1
    • Subread1
    • Trimmomatic1
    • VelvetOptimiser1
    • annotatemyids1
    • compute_sequence_length1
    • ggplot21
    • lofreq1
    • pathview1
    • pycoQC1
    • snippy1
    • Show N_FILTERS more
    • Content provider
    • GTN20
    • Show N_FILTERS more
    • Keyword
    • Transcriptomics5
    • español5
    • Introduction to Galaxy Analyses4
    • deutsch4
    • italiano4
    • Assembly3
    • QC3
    • collections3
    • gmod3
    • jbrowse13
    • microgalaxy3
    • prokaryote3
    • ChIP-seq2
    • Epigenetics2
    • Sequence analysis2
    • Variant Analysis2
    • mouse2
    • Genome Annotation1
    • Using Galaxy and Managing your Data1
    • bulk1
    • cyoa1
    • drosophila1
    • limma-voom1
    • metatranscriptomics1
    • network analysis1
    • rna-seq1
    • work-in-progress1
    • Show N_FILTERS more
    • Competency level
    • Beginner19
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International20
    • Show N_FILTERS more
    • Target audience
    • Students20
    • Show N_FILTERS more
    • Author
    • Bérénice Batut5
    • Helena Rasche5
    • Maria Doyle5
    • Anton Nekrutenko4
    • Nicola Soranzo4
    • Simon Gladman4
    • Anika Erxleben3
    • Anna Syme3
    • Clemens Blank3
    • Anne Pajon2
    • Belinda Phipson2
    • Björn Grüning2
    • Harriet Dashnow2
    • Joachim Wolff2
    • Mallory Freeberg2
    • Mo Heydarian2
    • Saskia Hiltemann2
    • Torsten Seemann2
    • Vivek Bhardwaj2
    • Alexandre Cormier1
    • Anna Trigos1
    • Anthony Bretaudeau1
    • Cameron Hyde1
    • Chao Zhang1
    • Charity Law1
    • Cristóbal Gallardo1
    • Dave Clements1
    • Delphine Lariviere1
    • Dilmurat Yusuf1
    • Erwan Corre1
    • Fidel Ramirez1
    • Friederike Dündar1
    • IGC Bioinformatics Unit1
    • Jovana Maksimovic1
    • Laura Leroi1
    • Lucille Delisle1
    • Matt Ritchie1
    • Nick Stoler1
    • Pavankumar Videm1
    • Peter van Heusden1
    • Sarah Peter1
    • Shian Su1
    • Stéphanie Robin1
    • Show N_FILTERS more
    • Contributor
    • Maria Doyle
    • Saskia Hiltemann319
    • Helena Rasche255
    • Björn Grüning249
    • Bérénice Batut134
    • Nicola Soranzo71
    • Cristóbal Gallardo60
    • Anthony Bretaudeau56
    • Martin Čech47
    • Niall Beard46
    • Armin Dadras38
    • Teresa Müller38
    • Gildas Le Corguillé34
    • Pavankumar Videm34
    • Yvan Le Bras34
    • Mehmet Tekman33
    • Wolfgang Maier33
    • Beatriz Serrano-Solano32
    • Wendi Bacon32
    • William Durand31
    • Melanie Föll30
    • Marie Josse27
    • Anup Kumar24
    • Subina Mehta23
    • Nate Coraor22
    • Simon Bray22
    • Anne Fouilloux17
    • Leonid Kostrykin17
    • Deepti Varshney16
    • Paul Zierep15
    • Tristan Reynolds15
    • Anton Nekrutenko14
    • Julia Jakiela14
    • Lucille Delisle14
    • Delphine Lariviere13
    • Pratik Jagtap13
    • Timothy J. Griffin12
    • Diana Chiang Jurado11
    • Mélanie Petera11
    • Pablo Moreno11
    • Daniela Schneider10
    • Marisa Loach10
    • Marius van den Beek10
    • Simon Gladman10
    • Anna Syme9
    • Matthias Bernt9
    • Stéphanie Robin9
    • Amirhossein Naghsh Nilchi8
    • David López8
    • Kaivan Kamali8
    • Peter van Heusden8
    • Verena Moosmann8
    • Katherine Do7
    • Alexandre Cormier6
    • Florian Heyl6
    • Hans-Rudolf Hotz6
    • Linelle Abueg6
    • Mallory Freeberg6
    • Morgan Howells6
    • Paulo Cilas Morais Lyra Junior6
    • Alireza Khanteymoori5
    • Bert Droesbeke5
    • Clea Siguret5
    • Clemens Blank5
    • Fabio Cumbo5
    • Riccardo Massei5
    • Christopher Barnett4
    • Coline Royaux4
    • Dave Clements4
    • Florian Christoph Sigloch4
    • Natalie Whitaker-Allen4
    • Bazante Sanders3
    • Donny Vrins3
    • Ekaterina Polkh3
    • Engy Nasr3
    • Jasper Ouwerkerk3
    • Joachim Wolff3
    • Katarzyna Kamieniecka3
    • Khaled Jum'ah3
    • Mateo Boudet3
    • Mateusz Kuzak3
    • Miaomiao Zhou3
    • Swathi Nataraj3
    • Timon Schlegel3
    • Alex Ostrovsky2
    • Anika Erxleben2
    • Arthur Barreau2
    • Carlos Chee Mendonça2
    • Christine Oger2
    • Christoph Stritt2
    • CicoZhang2
    • Enis Afgan2
    • Esteban Perez-Wohlfeil2
    • Fidel Ramirez2
    • Florence Combes2
    • Fotis E. Psomopoulos2
    • Graeme Tyson2
    • Helge Hecht2
    • Igor Makunin2
    • Jayadev Joshi2
    • Show N_FILTERS more
    • Resource type
    • e-learning20
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets19
    • Associated Workflows19
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: Galaxy

and Contributors: Maria Doyle

20 materials found
  • e-learning

    Microbial Variant Calling

    • Beginner
    Genetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy …
  • e-learning

    Calling very rare variants

    • Beginner
    Genetic variation Variant Analysis
  • e-learning

    Genome annotation with Prokka

    • Beginner
    Genomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote
  • e-learning

    Identification of the binding sites of the Estrogen receptor

    • Beginner
    Epigenomics ChIP-seq Epigenetics work-in-progress
  • e-learning

    Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)

    • Beginner
    Epigenomics ChIP-seq ChIP-seq Epigenetics
  • e-learning

    Making sense of a newly assembled genome

    • Beginner
    Sequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote
  • e-learning

    An Introduction to Genome Assembly

    • Beginner
    Sequence assembly Assembly
  • e-learning

    De Bruijn Graph Assembly

    • Beginner
    Sequence assembly Assembly
  • e-learning

    Network analysis with Heinz

    • Beginner
    Transcriptomics Transcriptomics metatranscriptomics network analysis
  • e-learning

    GO Enrichment Analysis

    • Beginner
    Transcriptomics Transcriptomics
  • 1
  • 2
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.