Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Comparative transcriptomics3
    • Transcriptome3
    • Transcriptomics3
    • Show N_FILTERS more
    • Tool
    • Galaxy9
    • SCANPY5
    • anndata4
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC3
    • annotatemyids2
    • Alevin1
    • BEDTools1
    • BWA1
    • DropletUtils1
    • Falco1
    • FastQC1
    • MACS1
    • Salmon1
    • epiScanpy1
    • Show N_FILTERS more
    • Content provider
    • GTN11
    • Show N_FILTERS more
    • Keyword
    • Single Cell
    • MIGHTS4
    • paper-replication4
    • CoDex2
    • Community2
    • Galaxy Community Building2
    • SIG2
    • data management2
    • transcriptomics2
    • 10x1
    • Contributing to the Galaxy Training Material1
    • epigenetics1
    • Show N_FILTERS more
    • Competency level
    • Beginner
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International11
    • Show N_FILTERS more
    • Target audience
    • Students11
    • Show N_FILTERS more
    • Author
    • Wendi Bacon7
    • Mehmet Tekman4
    • Marisa Loach2
    • Morgan Howells2
    • Jonathan Manning1
    • Julia Jakiela1
    • Pavankumar Videm1
    • Show N_FILTERS more
    • Contributor
    • Marisa Loach
    • Björn Grüning36
    • Helena Rasche34
    • Saskia Hiltemann34
    • Wendi Bacon33
    • Mehmet Tekman31
    • Pavankumar Videm25
    • Julia Jakiela17
    • Pablo Moreno11
    • Morgan Howells6
    • Bérénice Batut5
    • Nicola Soranzo5
    • Teresa Müller5
    • Anthony Bretaudeau4
    • Martin Čech4
    • Matthias Bernt3
    • Simon Bray3
    • Stéphanie Robin3
    • Amirhossein Naghsh Nilchi2
    • Armin Dadras2
    • Beatriz Serrano-Solano2
    • Camila Goclowski2
    • Carlos Chee Mendonça2
    • Cristóbal Gallardo2
    • David López2
    • Diana Chiang Jurado2
    • Gildas Le Corguillé2
    • Hans-Rudolf Hotz2
    • Jonathan Manning2
    • Donny Vrins1
    • Graeme Tyson1
    • Graham Etherington1
    • Katarzyna Kamieniecka1
    • Lucille Delisle1
    • Marius van den Beek1
    • Mennayousef1
    • Mohua Das1
    • Nate Coraor1
    • Timon Schlegel1
    • Show N_FILTERS more
    • Resource type
    • e-learning9
    • slides2
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows9
    • Associated Training Datasets8
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Keywords: Single Cell

and Competency level: Beginner

and Contributors: Marisa Loach

11 materials found
  • slides

    Single-cell Formats and Resources

    • Beginner
    Single Cell
  • e-learning

    Inferring single cell trajectories with Scanpy

    • Beginner
    MIGHTS Single Cell paper-replication
  • slides

    Automated Cell Annotation

    • Beginner
    Single Cell
  • e-learning

    Pre-processing of 10X Single-Cell ATAC-seq Datasets

    • Beginner
    10x Single Cell epigenetics
  • e-learning

    Removing the effects of the cell cycle

    • Beginner
    Single Cell
  • e-learning

    Comparing inferred cell compositions using MuSiC deconvolution

    • Beginner
    Single Cell transcriptomics
  • e-learning

    Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution

    • Beginner
    Single Cell data management transcriptomics
  • e-learning

    Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution

    • Beginner
    Single Cell data management
  • e-learning

    Combining single cell datasets after pre-processing

    • Beginner
    Transcriptomics MIGHTS Single Cell paper-replication
  • e-learning

    Generating a single cell matrix using Alevin

    • Beginner
    Transcriptomics MIGHTS Single Cell paper-replication
  • 1
  • 2
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.