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Competency level: Beginner

and Target audience: Students

and Contributors: Marisa Loach

11 materials found
  • slides

    Single-cell Formats and Resources

    • Beginner
    Single Cell
  • e-learning

    Inferring single cell trajectories with Scanpy

    • Beginner
    MIGHTS Single Cell paper-replication
  • slides

    Automated Cell Annotation

    • Beginner
    Single Cell
  • e-learning

    Pre-processing of 10X Single-Cell ATAC-seq Datasets

    • Beginner
    10x Single Cell epigenetics
  • e-learning

    Removing the effects of the cell cycle

    • Beginner
    Single Cell
  • e-learning

    Comparing inferred cell compositions using MuSiC deconvolution

    • Beginner
    Single Cell transcriptomics
  • e-learning

    Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution

    • Beginner
    Single Cell data management transcriptomics
  • e-learning

    Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution

    • Beginner
    Single Cell data management
  • e-learning

    Combining single cell datasets after pre-processing

    • Beginner
    Transcriptomics MIGHTS Single Cell paper-replication
  • e-learning

    Generating a single cell matrix using Alevin

    • Beginner
    Transcriptomics MIGHTS Single Cell paper-replication
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