Training materials
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e-learning
Creation of the labs in the different Galaxy instances for your community
• BeginnerCoDex Community Galaxy Community Building SIG -
slides
Single-cell Formats and Resources
• BeginnerSingle Cell -
e-learning
Inferring single cell trajectories with Scanpy
• BeginnerMIGHTS Single Cell paper-replication -
e-learning
Creation of resources listing all the tools and their metadata relevant to your community
• BeginnerSoftware engineering CoDex Community Galaxy Community Building SIG -
slides
Automated Cell Annotation
• BeginnerSingle Cell -
e-learning
Pre-processing of 10X Single-Cell ATAC-seq Datasets
• Beginner10x Single Cell epigenetics -
e-learning
Removing the effects of the cell cycle
• BeginnerSingle Cell -
e-learning
Comparing inferred cell compositions using MuSiC deconvolution
• BeginnerSingle Cell transcriptomics -
e-learning
Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution
• BeginnerSingle Cell data management transcriptomics -
e-learning
Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution
• BeginnerSingle Cell data management
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