Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Comparative transcriptomics2
    • Transcriptome2
    • Transcriptomics2
    • Biological sequences1
    • Genetic linkage1
    • Linkage1
    • Linkage mapping1
    • Mapping1
    • Sequence analysis1
    • Sequence databases1
    • Synteny1
    • Show N_FILTERS more
    • Tool
    • SAMtools
    • Galaxy33
    • SCANPY12
    • FastQC5
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
    • anndata4
    • DropletUtils3
    • FASTX-Toolkit3
    • MultiQC3
    • BWA2
    • Falco2
    • RSeQC2
    • RStudio2
    • STAR2
    • annotatemyids2
    • snpEff2
    • Alevin1
    • BEDTools1
    • BamTools1
    • Biopython1
    • Bowtie 21
    • Bwa-mem21
    • Cutadapt1
    • DESeq21
    • FeatureCounts1
    • GOseq1
    • HISAT21
    • HiCExplorer1
    • JBrowse1
    • MACS1
    • R1
    • SRA Software Toolkit1
    • Salmon1
    • Subread1
    • UMI-tools1
    • epiScanpy1
    • fastp1
    • ggplot21
    • lofreq1
    • pathview1
    • pyGenomeTracks1
    • Show N_FILTERS more
    • Content provider
    • GTN4
    • Show N_FILTERS more
    • Keyword
    • Introduction to Galaxy Analyses1
    • QC1
    • Sequence analysis1
    • Single Cell1
    • Transcriptomics1
    • collections1
    • deutsch1
    • español1
    • italiano1
    • mouse1
    • work-in-progress1
    • Show N_FILTERS more
    • Competency level
    • Beginner
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International4
    • Show N_FILTERS more
    • Target audience
    • Students4
    • Show N_FILTERS more
    • Author
    • Bérénice Batut2
    • Anika Erxleben1
    • Anton Nekrutenko1
    • Belinda Phipson1
    • Daniel Blankenberg1
    • Dave Clements1
    • Harriet Dashnow1
    • Helena Rasche1
    • Joachim Wolff1
    • Maria Doyle1
    • Marius van den Beek1
    • Mehmet Tekman1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Contributor
    • Mehmet Tekman
    • Helena Rasche20
    • Saskia Hiltemann20
    • Björn Grüning19
    • Bérénice Batut14
    • Nicola Soranzo11
    • Cristóbal Gallardo7
    • Niall Beard7
    • Armin Dadras6
    • Gildas Le Corguillé6
    • Wolfgang Maier6
    • Martin Čech5
    • William Durand5
    • Maria Doyle4
    • Teresa Müller4
    • Anthony Bretaudeau3
    • Tristan Reynolds3
    • Anton Nekrutenko2
    • Anup Kumar2
    • Deepti Varshney2
    • Ekaterina Polkh2
    • Fidel Ramirez2
    • Florian Heyl2
    • Hans-Rudolf Hotz2
    • Joachim Wolff2
    • Leily Rabbani2
    • Mallory Freeberg2
    • Pavankumar Videm2
    • Simon Gladman2
    • Verena Moosmann2
    • Antonia Taiani1
    • Delphine Lariviere1
    • Engy Nasr1
    • Friederike Dündar1
    • John Davis1
    • Katarzyna Kamieniecka1
    • Khaled Jum'ah1
    • Lucille Delisle1
    • Marius van den Beek1
    • Mélanie Petera1
    • Paul Zierep1
    • Saim Momin1
    • Simon Bray1
    • Stéphanie Robin1
    • Tom Brown1
    • Wendi Bacon1
    • Yvan Le Bras1
    • Show N_FILTERS more
    • Resource type
    • e-learning4
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets4
    • Associated Workflows4
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: SAMtools

and Competency level: Beginner

and Contributors: Mehmet Tekman

4 materials found
  • e-learning

    Pre-processing of Single-Cell RNA Data

    • Beginner
    Transcriptomics Single Cell work-in-progress
  • e-learning

    1: RNA-Seq reads to counts

    • Beginner
    Transcriptomics QC Transcriptomics collections mouse
  • e-learning

    NGS data logistics

    • Beginner
    Introduction to Galaxy Analyses
  • e-learning

    Mapping

    • Beginner
    Sequence analysis Mapping Sequence analysis deutsch español italiano
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.