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Contributors: Mehmet Tekman

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46 materials found

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e-learning

Converting NCBI Data to the AnnData Format

• Beginner
Single Cell data import data management
e-learning

Converting between common single cell data formats

• Beginner
Single Cell data import data management
e-learning

Importing files from public atlases

• Beginner
Single Cell data import data management
e-learning

Inferring single cell trajectories with Scanpy

• Beginner
MIGHTS Single Cell paper-replication
e-learning

Generating a single cell matrix using Alevin and combining datasets (bash + R)

• Beginner
10x MIGHTS Single Cell jupyter-notebook paper-replication
e-learning

Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)

• Beginner
MIGHTS Single Cell jupyter-notebook paper-replication
e-learning

Filter, plot, and explore single cell RNA-seq data with Seurat (R)

• Beginner
MIGHTS Single Cell jupyter-notebook paper-replication rmarkdown-notebook
e-learning

Scanpy Parameter Iterator

• Beginner
Single Cell
slides

Workshop Kickoff

• Beginner
Teaching and Hosting Galaxy training
slides

Automated Cell Annotation

• Beginner
Single Cell

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