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Tools: SAMtools

and Competency level: Beginner

and Contributors: Nicola Soranzo

11 materials found
  • e-learning

    From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis

    • Beginner
    Genetic variation Variant Analysis covid19 one-health virology
  • e-learning

    Exome sequencing data analysis for diagnosing a genetic disease

    • Beginner
    Genetic variation Variant Analysis
  • e-learning

    ATAC-Seq data analysis

    • Beginner
    Epigenomics Epigenetics
  • e-learning

    Identification of the binding sites of the Estrogen receptor

    • Beginner
    Epigenomics ChIP-seq Epigenetics work-in-progress
  • e-learning

    Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)

    • Beginner
    Epigenomics ChIP-seq ChIP-seq Epigenetics
  • e-learning

    Pre-processing of Single-Cell RNA Data

    • Beginner
    Transcriptomics Single Cell work-in-progress
  • e-learning

    Differential abundance testing of small RNAs

    • Beginner
    Transcriptomics Transcriptomics
  • e-learning

    1: RNA-Seq reads to counts

    • Beginner
    Transcriptomics QC Transcriptomics collections mouse
  • e-learning

    NGS data logistics

    • Beginner
    Introduction to Galaxy Analyses
  • e-learning

    Mapping

    • Beginner
    Sequence analysis Mapping Sequence analysis deutsch español italiano
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