Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • Spaces
  • Events
  • Materials
  • Workflows
  • Collections
  • e-Learning
  • Learning paths
  • Directory
    • Providers
    • Nodes

TeSSHub makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSSHub in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Community analysis3
    • Environmental microbiology3
    • Metagenomics3
    • Microbial ecology3
    • Microbiome3
    • Molecular community analysis3
    • Shotgun metagenomics3
    • Biological sequences2
    • Function analysis2
    • Functional analysis2
    • Metatranscriptomics2
    • Protein function analysis2
    • Protein function prediction2
    • Sequence analysis2
    • Sequence databases2
    • Taxonomy2
    • Assembly1
    • Sequence assembly1
    • Show N_FILTERS more
    • Tool
    • Cutadapt
    • Galaxy15
    • FastQC5
    • MultiQC5
    • taxonomy_krona_chart5
    • Bandage3
    • KrakenTools3
    • MetaPhlAn3
    • fastp3
    • BEDTools2
    • Bakta2
    • BamTools2
    • Bowtie 22
    • GraPhlAn2
    • QUAST2
    • SortMeRNA2
    • dRep2
    • export2graphlan2
    • humann2
    • kraken22
    • lotus22
    • ABRicate1
    • BCFtools1
    • Bracken1
    • CONCOCT1
    • CheckM1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • Combine Metaphlan and HUMAnN1
    • CoverM1
    • FASTX-Toolkit1
    • Falco1
    • FastTree1
    • Flye1
    • HUMAnN21
    • ISEScan1
    • Infernal1
    • Integron Finder1
    • JBrowse1
    • MAPseq1
    • MEGAHIT1
    • MLST1
    • MaxBin1
    • Medaka1
    • MetaBAT 21
    • Minimap21
    • NCBI Resources1
    • NGSUtils1
    • NanoPlot1
    • Newick Utilities1
    • PRINSEQ1
    • PlasmidFinder1
    • SAMtools1
    • SRA Software Toolkit1
    • SeqPrep1
    • Trimmomatic1
    • ampvis1
    • antiSMASH1
    • biomformat1
    • bx-python1
    • chemfp1
    • cmsearch-deoverlap1
    • dada21
    • dastool1
    • ggplot21
    • metaspades1
    • phyloseq1
    • seqtk1
    • shovill1
    • tbl2gff31
    • Show N_FILTERS more
    • Content provider
    • GTN3
    • Show N_FILTERS more
    • Keyword
    • Microbiome3
    • microgalaxy3
    • metatranscriptomics2
    • assembly1
    • metagenomics1
    • Show N_FILTERS more
    • Competency level
    • Beginner3
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Bérénice Batut3
    • Emma Leith2
    • Paul Zierep2
    • Pratik Jagtap2
    • Praveen Kumar2
    • Ray Sajulga2
    • Saskia Hiltemann2
    • Subina Mehta2
    • Engy Nasr1
    • Polina Polunina1
    • Vini Salazar1
    • Show N_FILTERS more
    • Contributor
    • Paul Zierep
    • Helena Rasche11
    • Saskia Hiltemann11
    • Björn Grüning10
    • Bérénice Batut7
    • Cristóbal Gallardo4
    • Anthony Bretaudeau3
    • Nicola Soranzo3
    • Alexandre Cormier2
    • Christine Oger2
    • Linelle Abueg2
    • Mateo Boudet2
    • Niall Beard2
    • Swathi Nataraj2
    • William Durand2
    • Wolfgang Maier2
    • Anika Erxleben1
    • Anna Syme1
    • Anne Fouilloux1
    • Anton Nekrutenko1
    • Anup Kumar1
    • Delphine Lariviere1
    • Engy Nasr1
    • Florian Heyl1
    • Gildas Le Corguillé1
    • José Manuel Domínguez1
    • Lucille Delisle1
    • Maria Doyle1
    • Marie Josse1
    • Marius van den Beek1
    • Matthias Bernt1
    • Matti Hoch1
    • Mira Kuntz1
    • Natalie Kucher1
    • Natalie Whitaker-Allen1
    • Pauline Seguineau1
    • Polina Polunina1
    • Sanjay Kumar Srikakulam1
    • Simon Bray1
    • Subina Mehta1
    • Teresa Müller1
    • Verena Moosmann1
    • Yvan Le Bras1
    • Show N_FILTERS more
    • Resource type
    • e-learning3
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets3
    • Associated Workflows3
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email
  • Harvest using OAI-PMH

Email Subscription

Harvest using OAI-PMH

Exchange content using OAI-PMH

Use an OAI-PMH compatible tool to harvest metadata using the OAI-PMH endpoint. In particular, this endpoint can be used for exchanging content between different TeSS instances. See the TeSS documentation for more details.

Register training material

Tools: Cutadapt

and Contributors: Paul Zierep

3 materials found
  • e-learning

    Metatranscriptomics analysis using microbiome RNA-seq data

    • Beginner
    Metagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy
  • e-learning

    Assembly of metagenomic sequencing data

    • Beginner
    Metagenomics Sequence assembly Microbial ecology Microbiome assembly metagenomics microgalaxy
  • e-learning

    Metatranscriptomics analysis using microbiome RNA-seq data (short)

    • Beginner
    Metagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy
Training eSupport System
[email protected]
Contribute
About TeSSHub
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSSHub has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.