Training materials
Scientific topics: Transcriptomics
and Competency level: Beginner
and Contributors: Pavankumar Videm
13 materials found
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slides
Whole transcriptome analysis of Arabidopsis thaliana
• BeginnerTranscriptomics Transcriptomics -
e-learning
Inferring single cell trajectories with Monocle3
• BeginnerTranscriptomics MIGHTS Single Cell paper-replication -
e-learning
Combining single cell datasets after pre-processing
• BeginnerTranscriptomics MIGHTS Single Cell paper-replication -
e-learning
Inferring single cell trajectories with Scanpy (Python)
• BeginnerTranscriptomics MIGHTS Single Cell jupyter-notebook paper-replication -
e-learning
Whole transcriptome analysis of Arabidopsis thaliana
• BeginnerTranscriptomics Transcriptomics miRNA plants stress tolerance -
e-learning
Pre-processing of 10X Single-Cell RNA Datasets
• BeginnerTranscriptomics 10x Single Cell -
e-learning
Clustering 3K PBMCs with Scanpy
• BeginnerTranscriptomics 10x Single Cell -
e-learning
Single-cell quality control with scater
• BeginnerTranscriptomics Single Cell work-in-progress -
e-learning
Downstream Single-cell RNA analysis with RaceID
• BeginnerTranscriptomics Single Cell work-in-progress -
e-learning
Small Non-coding RNA Clustering using BlockClust
• BeginnerTranscriptomics Transcriptomics
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