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Contributors: Pavankumar Videm

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40 materials found

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e-learning

Importing files from public atlases

• Beginner
Single Cell data import data management
e-learning

Inferring single cell trajectories with Scanpy

• Beginner
MIGHTS Single Cell paper-replication
e-learning

Filter, plot, and explore single cell RNA-seq data with Seurat

• Beginner
MIGHTS Single Cell paper-replication
e-learning

Generating a single cell matrix using Alevin and combining datasets (bash + R)

• Beginner
10x MIGHTS Single Cell jupyter-notebook paper-replication
e-learning

Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)

• Beginner
MIGHTS Single Cell jupyter-notebook paper-replication
e-learning

Filter, plot, and explore single cell RNA-seq data with Seurat (R)

• Beginner
MIGHTS Single Cell jupyter-notebook paper-replication rmarkdown-notebook
e-learning

CUT&RUN data analysis

• Beginner
Epigenomics Epigenetics
slides

Whole transcriptome analysis of Arabidopsis thaliana

• Beginner
Transcriptomics Transcriptomics
e-learning

Pre-processing of 10X Single-Cell ATAC-seq Datasets

• Beginner
10x Single Cell epigenetics
e-learning

Inferring single cell trajectories with Monocle3 (R)

• Beginner
MIGHTS Single Cell jupyter-notebook paper-replication rmarkdown-notebook

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