Training materials
Keywords: Single Cell
and Contributors: Pavankumar Videm
and Related resources: Associated Training Datasets
22 materials found
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e-learning
Pseudobulk Analysis with Decoupler and EdgeR
• BeginnerSingle Cell pseudobulk transcriptomics -
e-learning
Clustering 3K PBMCs with Seurat
• Beginner10x Single Cell -
e-learning
Single-cell ATAC-seq standard processing with SnapATAC2
•• Intermediate10x Single Cell epigenetics single-cell -
e-learning
Converting NCBI Data to the AnnData Format
• BeginnerSingle Cell data import data management -
e-learning
Converting between common single cell data formats
• BeginnerSingle Cell data import data management -
e-learning
Inferring single cell trajectories with Scanpy
• BeginnerMIGHTS Single Cell paper-replication -
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat
• BeginnerMIGHTS Single Cell paper-replication -
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• BeginnerMIGHTS Single Cell jupyter-notebook paper-replication -
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• BeginnerMIGHTS Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
Pre-processing of 10X Single-Cell ATAC-seq Datasets
• Beginner10x Single Cell epigenetics