Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • Spaces
  • Events
  • Materials
  • Workflows
  • Collections
  • e-Learning
  • Learning paths
  • Directory
    • Providers
    • Nodes

TeSSHub makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSSHub in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Comparative transcriptomics17
    • Transcriptome17
    • Transcriptomics17
    • Bottom-up proteomics3
    • Discovery proteomics3
    • Epigenomics3
    • MS-based targeted proteomics3
    • MS-based untargeted proteomics3
    • Metaproteomics3
    • Peptide identification3
    • Protein and peptide identification3
    • Proteomics3
    • Quantitative proteomics3
    • Targeted proteomics3
    • Top-down proteomics3
    • Bayesian methods1
    • Biodiversity1
    • Biostatistics1
    • Descriptive statistics1
    • Diffraction experiment1
    • Gaussian processes1
    • Imaging1
    • Inferential statistics1
    • Markov processes1
    • Microscopy1
    • Microscopy imaging1
    • Multivariate statistics1
    • Optical super resolution microscopy1
    • Photonic force microscopy1
    • Photonic microscopy1
    • Probabilistic graphical model1
    • Probability1
    • Proteogenomics1
    • Statistics1
    • Statistics and probability1
    • Taxonomy1
    • Show N_FILTERS more
    • Tool
    • Galaxy41
    • SCANPY13
    • Falco6
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • MultiQC5
    • anndata5
    • FastQC4
    • Trim Galore4
    • BEDTools3
    • Biopython3
    • DESeq23
    • DeepTools3
    • DropletUtils3
    • MACS3
    • Salmon3
    • annotatemyids3
    • ggplot23
    • BWA2
    • RSeQC2
    • RStudio2
    • SAMtools2
    • STAR2
    • Targetfinder.org2
    • miRDeep22
    • Alevin1
    • BamTools1
    • Bowtie 21
    • FeatureCounts1
    • GOEnrichment1
    • GOseq1
    • IDR1
    • IsoformSwitchAnalyzeR1
    • JBrowse 21
    • MEME1
    • MSstatsTMT1
    • MaxQuant1
    • MethylDackel1
    • PfamScan1
    • R1
    • SeqCode1
    • Seurat1
    • StringTie1
    • UCSC Genome Browser Utilities1
    • UMI-tools1
    • UniProt1
    • blockbuster1
    • compute_sequence_length1
    • edgeR1
    • epiScanpy1
    • fastp1
    • g:Profiler1
    • gffcompare1
    • gffread1
    • pathview1
    • pyGenomeTracks1
    • rnaQUAST1
    • scp1
    • Show N_FILTERS more
    • Content provider
    • GTN47
    • Show N_FILTERS more
    • Keyword
    • Single Cell34
    • paper-replication12
    • MIGHTS11
    • 10x8
    • Transcriptomics5
    • data management5
    • deconvolution5
    • jupyter-notebook5
    • transcriptomics5
    • single-cell4
    • Epigenetics3
    • Proteomics3
    • data import3
    • sc_formats3
    • epigenetics2
    • plants2
    • rmarkdown-notebook2
    • work-in-progress2
    • ChIP-seq1
    • Data handling1
    • Data management1
    • Data sharing1
    • Drop-seq1
    • GO enrichment1
    • Imaging1
    • QC1
    • Statistics and machine learning1
    • Validation1
    • alternative splicing1
    • bulk1
    • collections1
    • cyoa1
    • deutsch1
    • drosophila1
    • español1
    • isoform switching1
    • italiano1
    • label-free1
    • miRNA1
    • microgalaxy1
    • pseudobulk1
    • rna-seq1
    • stress tolerance1
    • Show N_FILTERS more
    • Competency level
    • Beginner43
    • Intermediate3
    • Advanced1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International47
    • Show N_FILTERS more
    • Target audience
    • Students
    • Instructors1
    • Show N_FILTERS more
    • Author
    • Wendi Bacon13
    • Mehmet Tekman11
    • Pavankumar Videm10
    • Julia Jakiela8
    • Morgan Howells5
    • Cristóbal Gallardo4
    • Marisa Loach4
    • Bérénice Batut3
    • Anika Erxleben2
    • Beatriz Serrano-Solano2
    • Camila Goclowski2
    • Clemens Blank2
    • Diana Chiang Jurado2
    • Hans-Rudolf Hotz2
    • Lucille Delisle2
    • Nicola Soranzo2
    • Alex Ostrovsky1
    • Amirhossein Naghsh Nilchi1
    • Björn Grüning1
    • Daniel Blankenberg1
    • Devon Ryan1
    • Fidel Ramirez1
    • Florian Heyl1
    • Friederike Dündar1
    • Graham Etherington1
    • Helge Hecht1
    • James Johnson1
    • Joachim Wolff1
    • Jonathan Manning1
    • Kristina Gomoryova1
    • Leily Rabbani1
    • Maarten Paul1
    • Mallory Freeberg1
    • Maria Doyle1
    • Martin Etzrodt1
    • Matthias Fahrner1
    • Melanie Föll1
    • Menna Gamal1
    • Mo Heydarian1
    • Peter van Heusden1
    • Pratik Jagtap1
    • Subina Mehta1
    • Timon Schlegel1
    • Timothy J. Griffin1
    • Verena Moosmann1
    • Vivek Bhardwaj1
    • Show N_FILTERS more
    • Contributor
    • Pavankumar Videm
    • Saskia Hiltemann448
    • Helena Rasche372
    • Björn Grüning320
    • Bérénice Batut186
    • Nicola Soranzo89
    • Cristóbal Gallardo79
    • Anthony Bretaudeau78
    • Wendi Bacon57
    • Martin Čech55
    • Niall Beard55
    • Armin Dadras46
    • Beatriz Serrano-Solano46
    • Teresa Müller46
    • William Durand43
    • Mehmet Tekman42
    • Gildas Le Corguillé40
    • Yvan Le Bras40
    • Melanie Föll35
    • Anup Kumar33
    • Wolfgang Maier32
    • Marius van den Beek29
    • Marie Josse28
    • Subina Mehta28
    • Simon Bray24
    • Anne Fouilloux23
    • Donny Vrins22
    • Maria Doyle22
    • Nate Coraor22
    • Peter van Heusden21
    • Leonid Kostrykin20
    • Tristan Reynolds20
    • Anton Nekrutenko18
    • Bazante Sanders18
    • Julia Jakiela18
    • Deepti Varshney17
    • Lucille Delisle17
    • Khaled Jum'ah16
    • Petros Kountouris16
    • Pratik Jagtap16
    • Paul Zierep15
    • Delphine Lariviere14
    • Diana Chiang Jurado13
    • Daniela Schneider12
    • David López12
    • Marisa Loach12
    • Mélanie Petera12
    • Timothy J. Griffin12
    • Dave Clements11
    • Matthias Bernt11
    • Pablo Moreno11
    • Stéphanie Robin11
    • Katarzyna Kamieniecka10
    • Simon Gladman10
    • Anna Syme9
    • Mallory Freeberg9
    • Alexandre Cormier8
    • Amirhossein Naghsh Nilchi8
    • Florian Heyl8
    • Kaivan Kamali8
    • Verena Moosmann8
    • Christopher Barnett7
    • Katherine Do7
    • Melissa Burke7
    • Morgan Howells7
    • Clemens Blank6
    • Ekaterina Polkh6
    • Florian Christoph Sigloch6
    • Hans-Rudolf Hotz6
    • Paulo Cilas Morais Lyra Junior6
    • Alireza Khanteymoori5
    • Bert Droesbeke5
    • Clea Siguret5
    • Fabio Cumbo5
    • Linelle Abueg5
    • Riccardo Massei5
    • Wandrille Duchemin5
    • olisand5
    • Andrea Bagnacani4
    • Coline Royaux4
    • Fotis E. Psomopoulos4
    • Joachim Wolff4
    • Laura Leroi4
    • Nadia Goué4
    • Natalie Whitaker-Allen4
    • Romane LIBOUBAN4
    • Solenne Correard4
    • Sotiroula Chatzimatthaiou4
    • Anika Erxleben3
    • Eli Chadwick3
    • Engy Nasr3
    • Enis Afgan3
    • Erwan Corre3
    • Jasper Ouwerkerk3
    • Jennifer Hillman-Jackson3
    • Kenza Bazi-Kabbaj3
    • Krzysztof Poterlowicz3
    • Maria Christina Maniou3
    • Martijn Kersloot3
    • Mateo Boudet3
    • Show N_FILTERS more
    • Resource type
    • e-learning45
    • slides2
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets42
    • Associated Workflows40
    • Jupyter Notebook (with Solutions)3
    • Jupyter Notebook (without Solutions)3
    • Quarto/RMarkdown Notebook2
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email
  • Harvest using OAI-PMH

Email Subscription

Harvest using OAI-PMH

Exchange content using OAI-PMH

Use an OAI-PMH compatible tool to harvest metadata using the OAI-PMH endpoint. In particular, this endpoint can be used for exchanging content between different TeSS instances. See the TeSS documentation for more details.

Register training material

Target audience: Students

and Contributors: Pavankumar Videm

47 materials found
  • e-learning

    Generating a single cell matrix using Alevin

    • Beginner
    Transcriptomics MIGHTS Single Cell paper-replication
  • e-learning

    Bulk RNA Deconvolution with MuSiC

    • Beginner
    Transcriptomics Single Cell deconvolution transcriptomics
  • e-learning

    Filter, plot and explore single-cell RNA-seq data with Scanpy

    • Beginner
    Transcriptomics MIGHTS Single Cell paper-replication
  • e-learning

    Reference-based RNA-Seq data analysis

    • Beginner
    Transcriptomics QC Transcriptomics bulk collections cyoa deutsch drosophila español italiano …
  • e-learning

    MaxQuant and MSstats for the analysis of label-free data

    •• Intermediate
    Proteomics Proteomics label-free
  • e-learning

    Metaproteomics tutorial

    • Beginner
    Proteomics Proteogenomics Biodiversity Taxonomy Proteomics microgalaxy
  • e-learning

    Understanding Barcodes

    • Beginner
    Transcriptomics Single Cell single-cell
  • 1
  • 2
  • 3
  • 4
  • 5
Training eSupport System
[email protected]
Contribute
About TeSSHub
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSSHub has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.