Training materials
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e-learning
Where to start with bioimage analysis in Galaxy
• BeginnerImaging Bioimaging Histology Imaging Microscopy -
e-learning
Execute a BiaPy workflow in Galaxy
•• IntermediateImaging 3D image Conversion Deep learning Image annotation Image segmentation Imaging Overlay Volume rendering -
e-learning
Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy
• BeginnerImaging Image segmentation Imaging Parameter optimisation Validation -
e-learning
Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines
• BeginnerImaging IDR dataset Imaging Overlay Rasterisation Spot detection -
e-learning
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy
•• IntermediateImaging Data handling Data management Data sharing Imaging ROI selection