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• • Scientific topic
  • Algorithms54
  • Computer programming54
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  • Comparative transcriptomics37
  • Transcriptome37
  • Transcriptomics37
  • Biodiversity34
  • Computational ecology29
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  • Biological sequences28
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  • Assembly22
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  • Bottom-up proteomics19
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  • Proteomics19
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  • Antimicrobial stewardship15
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  • Epigenomics13
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  • Diffraction experiment8
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  • Evolution7
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  • Exometabolomics7
  • LC-MS-based metabolomics7
  • MS-based metabolomics7
  • MS-based targeted metabolomics7
  • MS-based untargeted metabolomics7
  • Mass spectrometry-based metabolomics7
  • Metabolites7
  • Metabolome7
  • Metabolomics7
  • Metabonomics7
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  • DNA metabarcoding5
  • De novo genome sequencing5
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  • Epidemiology5
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• • Tool
  • Galaxy242
  • FastQC28
  • SAMtools20
  • MultiQC19
  • BEDTools14
  • scikit-learn14
  • BWA12
  • DeepTools11
  • Falco11
  • fastp11
  • BLAST10
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  • taxonomy_krona_chart10
  • Cutadapt9
  • GEMINI9
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  • ggplot28
  • FreeBayes7
  • QUAST7
  • Trimmomatic7
  • BamTools6
  • JBrowse6
  • MetaPhlAn5
  • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
  • kraken25
  • Biopython4
  • Bowtie 24
  • Diamond4
  • Flye4
  • Galaxy Image Analysis4
  • HISAT24
  • KrakenTools4
  • Minimap24
  • STAR4
  • Trim Galore4
  • Unicycler4
  • Workflow4Metabolomics4
  • anndata4
  • annotatemyids4
  • bx-python4
  • mothur4
  • seqtk4
  • snpEff4
  • BCFtools3
  • BUSCO3
  • Bracken3
  • Bwa-mem23
  • Clustal 1.8 (Clustal W, Clustal X)3
  • DESeq23
  • DropletUtils3
  • Galactic Circos3
  • GraPhlAn3
  • MACS3
  • Newick Utilities3
  • RStudio3
  • Salmon3
  • SeqCode3
  • SortMeRNA3
  • Stacks3
  • export2graphlan3
  • humann3
  • scikit-image3
  • xcms3
  • Cardinal2
  • ChIPpeakAnno2
  • Combine Metaphlan and HUMAnN2
  • FASTQE2
  • GECKO2
  • GOEnrichment2
  • GOseq2
  • GenomeScope 2.02
  • HUMAnN22
  • Heinz2
  • InterProScan (EBI)2
  • JBrowse 22
  • MAFFT2
  • MEME2
  • MSstats2
  • MaxQuant2
  • Medaka2
  • Merqury2
  • R2
  • RSeQC2
  • Racon2
  • Recentrifuge2
  • RepeatMasker2
  • SPAdes2
  • SRA Software Toolkit2
  • UCSC Genome Browser Utilities2
  • UMI-tools2
  • Vcflib2
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  • clusterProfiler2
  • ewastools2
  • gfastats2
  • lofreq2
  • lotus22
  • msConvert2
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• • Content provider
  • GTN472
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• • Keyword
  • Galaxy Server administration61
  • biodiversity35
  • Single Cell34
  • Ecology29
  • Development in Galaxy28
  • microgalaxy28
  • Contributing to the Galaxy Training Material24
  • Foundations of Data Science24
  • Transcriptomics24
  • jupyter-notebook23
  • Statistics and machine learning22
  • Microbiome19
  • Proteomics19
  • ansible19
  • Assembly18
  • git-gat18
  • Climate17
  • FAIR Data, Workflows, and Research17
  • Introduction to Galaxy Analyses16
  • Teaching and Hosting Galaxy training16
  • interactive-tools16
  • Genome Annotation15
  • Using Galaxy and Managing your Data15
  • Epigenetics13
  • earth-system12
  • prokaryote12
  • MIGHTS11
  • Variant Analysis11
  • fair11
  • paper-replication11
  • work-in-progress10
  • Sequence analysis9
  • plants9
  • Galaxy Community Building8
  • label-free8
  • ocean8
  • DDA7
  • EBV dataset7
  • EBV workflow7
  • Evolution7
  • Metabolomics7
  • cyoa7
  • ecology7
  • español7
  • metagenomics7
  • Imaging6
  • assembly6
  • data management6
  • data stewardship6
  • deutsch6
  • elixir6
  • gmod6
  • italiano6
  • jobs6
  • metabarcoding6
  • metabolomics6
  • nanopore6
  • train-the-trainers6
  • transcriptomics6
  • covid195
  • deconvolution5
  • deploying5
  • jbrowse15
  • metatranscriptomics5
  • ro-crate5
  • 10x4
  • 16S4
  • Community4
  • QC4
  • SIG4
  • Visualisation4
  • genetic composition EBV class4
  • illumina4
  • mouse4
  • pangeo4
  • Bioimaging3
  • ChIP-seq3
  • Digital Humanities3
  • FAIR3
  • Image segmentation3
  • Overlay3
  • RAD-seq3
  • Synthetic Biology3
  • amr3
  • bacteria3
  • climate3
  • collections3
  • data import3
  • deep-learning3
  • dmp3
  • eukaryote3
  • galaxy-intro3
  • gbif3
  • modeling3
  • monitoring3
  • one-health3
  • open3
  • rmarkdown-notebook3
  • sc_formats3
  • single-cell3
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• • Competency level
  • Beginner
  • Intermediate96
  • Advanced13
  • Not specified11
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• • Licence
  • Creative Commons Attribution 4.0 International472
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• • Target audience
  • Students335
  • Galaxy Administrators89
  • Instructors48
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• • Author
  • Helena Rasche89
  • Bérénice Batut85
  • Saskia Hiltemann51
  • Björn Grüning38
  • Simon Gladman30
  • Yvan Le Bras26
  • Nate Coraor25
  • Anton Nekrutenko20
  • Nicola Soranzo20
  • Wendi Bacon17
  • Anne Fouilloux16
  • Anthony Bretaudeau16
  • Marie Josse16
  • Fotis E. Psomopoulos15
  • Paul Zierep14
  • Subina Mehta14
  • Julia Jakiela12
  • Mehmet Tekman12
  • Katarzyna Kamieniecka11
  • Krzysztof Poterlowicz11
  • Anup Kumar10
  • Bazante Sanders10
  • Dave Clements10
  • Maria Doyle10
  • Martin Čech10
  • The Carpentries10
  • James Johnson9
  • Marius van den Beek9
  • Anika Erxleben8
  • Daniel Blankenberg8
  • Delphine Lariviere8
  • Pavankumar Videm8
  • Cristóbal Gallardo7
  • Joachim Wolff7
  • John Chilton7
  • Kaivan Kamali7
  • Katherine Do7
  • Lucille Delisle7
  • Pratik Jagtap7
  • Allegra Via6
  • Anna Syme6
  • Anne Pajon6
  • Clemens Blank6
  • Coline Royaux6
  • Donny Vrins6
  • ELIXIR Goblet Train the Trainers6
  • Khaled Jum'ah6
  • Melanie Föll6
  • Michael Charleston6
  • Morgan Howells6
  • Patricia Palagi6
  • Wolfgang Maier6
  • Alexandre Cormier5
  • Emma Leith5
  • Erwan Corre5
  • Gildas Le Corguillé5
  • Laura Leroi5
  • Solenne Correard5
  • Stéphanie Robin5
  • Alex Ostrovsky4
  • Alireza Khanteymoori4
  • Cyril Monjeaud4
  • Diana Chiang Jurado4
  • Florian Heyl4
  • Keiler Collier4
  • Mallory Freeberg4
  • Marisa Loach4
  • Mira Kuntz4
  • Praveen Kumar4
  • Ray Sajulga4
  • Simon Bray4
  • Simone Leo4
  • Vivek Bhardwaj4
  • Youri Hoogstrate4
  • Andrea Bagnacani3
  • Avans Hogeschool3
  • Daniela Schneider3
  • Dannon Baker3
  • Engy Nasr3
  • Fidel Ramirez3
  • Florian Christoph Sigloch3
  • Gianmauro Cuccuru3
  • Guillaume Gricourt3
  • Hans-Rudolf Hotz3
  • Ioana Popescu3
  • Jean-Loup Faulon3
  • Joan Hérisson3
  • John Davis3
  • Kenza Bazi-Kabbaj3
  • Laura Cooper3
  • Lisanna Paladin3
  • Mateo Boudet3
  • Matthias Bernt3
  • Mirela Minkova3
  • Mo Heydarian3
  • Mélanie Petera3
  • Nadia Goué3
  • Pauline Seguineau3
  • Robert Andrews3
  • Ross Lazarus3
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• • Contributor
  • Saskia Hiltemann
  • Helena Rasche411
  • Björn Grüning340
  • Bérénice Batut199
  • Nicola Soranzo157
  • Martin Čech116
  • Cristóbal Gallardo90
  • Niall Beard83
  • Anthony Bretaudeau77
  • Nate Coraor66
  • Wendi Bacon65
  • Armin Dadras57
  • Gildas Le Corguillé55
  • William Durand54
  • Simon Gladman50
  • Marius van den Beek46
  • Mehmet Tekman44
  • Pavankumar Videm44
  • Lucille Delisle42
  • Teresa Müller42
  • Yvan Le Bras42
  • Marie Josse36
  • Beatriz Serrano-Solano29
  • Wolfgang Maier26
  • Maria Doyle22
  • Anne Fouilloux21
  • Anup Kumar21
  • Julia Jakiela20
  • Tristan Reynolds18
  • Khaled Jum'ah16
  • Melanie Föll16
  • Petros Kountouris16
  • Subina Mehta16
  • Marisa Loach15
  • Paul Zierep15
  • Pratik Jagtap15
  • Simon Bray15
  • Deepti Varshney14
  • Bazante Sanders13
  • Daniela Schneider13
  • David López13
  • Donny Vrins13
  • Mira Kuntz13
  • Anton Nekrutenko12
  • Delphine Lariviere12
  • Matthias Bernt12
  • Pablo Moreno12
  • Timothy J. Griffin12
  • Gianmauro Cuccuru11
  • Mélanie Petera11
  • Peter van Heusden11
  • Katarzyna Kamieniecka10
  • Paul De Geest9
  • Elin Kronander8
  • John Chilton8
  • Kaivan Kamali8
  • Leonid Kostrykin8
  • Verena Moosmann8
  • Wolmar Nyberg Åkerström8
  • Amirhossein Naghsh Nilchi7
  • Anna Syme7
  • Diana Chiang Jurado7
  • Florian Heyl7
  • Hans-Rudolf Hotz7
  • Katherine Do7
  • Markus Englund7
  • Mattias Strömberg7
  • Melissa Burke7
  • Morgan Howells7
  • Niclas Jareborg7
  • Stephan Nylinder7
  • Tomas Klingström7
  • Yvonne Kallberg7
  • Alexandre Cormier6
  • Dave Clements6
  • Ekaterina Polkh6
  • Erik Hedman6
  • Mallory Freeberg6
  • Sabine Österle6
  • Solenne Correard6
  • Alex Ostrovsky5
  • Alireza Khanteymoori5
  • Bert Droesbeke5
  • Catherine Bromhead5
  • Enis Afgan5
  • John Davis5
  • Stéphanie Robin5
  • Vassilios Ioannidis5
  • Andrea Bagnacani4
  • Clea Siguret4
  • Coline Royaux4
  • Daniel Sobral4
  • Dave B.4
  • Eli Chadwick4
  • Fotis E. Psomopoulos4
  • Phil Reed4
  • Pinar Alper4
  • Sotiroula Chatzimatthaiou4
  • Tim Beck4
  • Alexander Botzki3
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• • Resource type
  • e-learning366
  • slides104
  • hands-on tutorial2
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• • Related resource
  • Associated Training Datasets219
  • Associated Workflows205
  • Jupyter Notebook (with Solutions)22
  • Jupyter Notebook (without Solutions)22
  • Quarto/RMarkdown Notebook3
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• • Collection
  • ELIXIR Biodiversity Community5
  • 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
  • ELIXIR hCNV community - collection of courses and materials.1
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