Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Biological sequences4
    • Exomes4
    • Genome annotation4
    • Genomes4
    • Genomics4
    • Personal genomics4
    • Sequence analysis4
    • Sequence databases4
    • Synthetic genomics4
    • Viral genomics4
    • Whole genomes4
    • Antimicrobial stewardship2
    • Medical microbiology2
    • Microbial genetics2
    • Microbial physiology2
    • Microbial surveillance2
    • Microbiological surveillance2
    • Microbiology2
    • Molecular infection biology2
    • Molecular microbiology2
    • AMR1
    • Antibiotic resistance (ABR)1
    • Antifungal resistance1
    • Antimicrobial resistance1
    • Antiprotozoal resistance1
    • Antiviral resistance1
    • Communicable disease1
    • De novo genome sequencing1
    • Epidemiology1
    • Extensive drug resistance (XDR)1
    • Gene and protein families1
    • Gene families1
    • Gene family1
    • Gene system1
    • Genes, gene family or system1
    • Genetic linkage1
    • Genome sequencing1
    • Infectious disease1
    • Linkage1
    • Linkage mapping1
    • Mapping1
    • Multidrug resistance1
    • Multiple drug resistance (MDR)1
    • Multiresistance1
    • Pandrug resistance (PDR)1
    • Protein families1
    • Protein sequence classification1
    • Public health1
    • Public health and epidemiology1
    • Synteny1
    • Total drug resistance (TDR)1
    • Transmissible disease1
    • WGS1
    • Whole genome resequencing1
    • Whole genome sequencing1
    • Show N_FILTERS more
    • Tool
    • JBrowse
    • Galaxy242
    • FastQC28
    • SAMtools20
    • MultiQC19
    • BEDTools14
    • scikit-learn14
    • BWA12
    • DeepTools11
    • Falco11
    • fastp11
    • BLAST10
    • Cutadapt10
    • SCANPY10
    • taxonomy_krona_chart10
    • GEMINI9
    • Bandage8
    • FASTX-Toolkit8
    • NanoPlot8
    • ggplot28
    • FreeBayes7
    • QUAST7
    • Trimmomatic7
    • BamTools6
    • MetaPhlAn5
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • kraken25
    • Biopython4
    • Bowtie 24
    • Diamond4
    • Flye4
    • HISAT24
    • KrakenTools4
    • Minimap24
    • STAR4
    • Trim Galore4
    • Unicycler4
    • Workflow4Metabolomics4
    • anndata4
    • annotatemyids4
    • bx-python4
    • mothur4
    • seqtk4
    • snpEff4
    • BCFtools3
    • BUSCO3
    • Bracken3
    • Bwa-mem23
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DESeq23
    • DropletUtils3
    • Galactic Circos3
    • Galaxy Image Analysis3
    • GraPhlAn3
    • MACS3
    • Newick Utilities3
    • RStudio3
    • Salmon3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
    • export2graphlan3
    • humann3
    • scikit-image3
    • xcms3
    • Cardinal2
    • ChIPpeakAnno2
    • Combine Metaphlan and HUMAnN2
    • FASTQE2
    • GECKO2
    • GOEnrichment2
    • GOseq2
    • GenomeScope 2.02
    • HUMAnN22
    • Heinz2
    • InterProScan (EBI)2
    • JBrowse 22
    • MAFFT2
    • MEME2
    • MSstats2
    • MaxQuant2
    • Medaka2
    • Merqury2
    • R2
    • RSeQC2
    • Racon2
    • Recentrifuge2
    • RepeatMasker2
    • SPAdes2
    • SRA Software Toolkit2
    • UCSC Genome Browser Utilities2
    • UMI-tools2
    • Vcflib2
    • VelvetOptimiser2
    • clusterProfiler2
    • ewastools2
    • gfastats2
    • lofreq2
    • lotus22
    • msConvert2
    • Show N_FILTERS more
    • Content provider
    • GTN6
    • Show N_FILTERS more
    • Keyword
    • Genome Annotation4
    • prokaryote3
    • Sequence analysis2
    • gmod2
    • jbrowse12
    • microgalaxy2
    • amr1
    • deutsch1
    • español1
    • illumina1
    • italiano1
    • one-health1
    • Show N_FILTERS more
    • Competency level
    • Beginner
    • Intermediate6
    • Advanced1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International6
    • Show N_FILTERS more
    • Target audience
    • Students6
    • Show N_FILTERS more
    • Author
    • Anna Syme2
    • Bérénice Batut2
    • Helena Rasche2
    • Joachim Wolff2
    • Simon Gladman2
    • Torsten Seemann2
    • Anthony Bretaudeau1
    • Bazante Sanders1
    • Cristóbal Gallardo1
    • Engy Nasr1
    • Mateo Boudet1
    • Nathan Dunn1
    • Saskia Hiltemann1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann
    • Helena Rasche7
    • Anthony Bretaudeau6
    • Björn Grüning6
    • Bérénice Batut6
    • Niall Beard4
    • Nicola Soranzo4
    • Anna Syme2
    • Maria Doyle2
    • Teresa Müller2
    • Tristan Reynolds2
    • William Durand2
    • Anup Kumar1
    • Bazante Sanders1
    • Cristóbal Gallardo1
    • Deepti Varshney1
    • Ekaterina Polkh1
    • Mehmet Tekman1
    • Miaomiao Zhou1
    • Paul Zierep1
    • Simon Gladman1
    • pimarin1
    • Show N_FILTERS more
    • Resource type
    • e-learning3
    • slides3
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets6
    • Associated Workflows6
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: JBrowse

and Competency level: Beginner

and Contributors: Saskia Hiltemann

6 materials found
  • e-learning

    Identification of AMR genes in an assembled bacterial genome

    • Beginner
    Genomics Whole genome sequencing Public health and epidemiology Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod …
  • e-learning

    Genome annotation with Prokka

    • Beginner
    Genomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote
  • slides

    Refining Genome Annotations with Apollo

    • Beginner
    Genomics Genome Annotation prokaryote
  • slides

    Genome annotation with Prokka

    • Beginner
    Genomics Genome Annotation prokaryote
  • e-learning

    Mapping

    • Beginner
    Sequence analysis Mapping Sequence analysis deutsch español italiano
  • slides

    Mapping

    • Beginner
    Sequence analysis Sequence analysis
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.