Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • Spaces
  • Events
  • Materials
  • Workflows
  • Collections
  • e-Learning
  • Learning paths
  • Directory
    • Providers
    • Nodes

TeSSHub makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSSHub in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Taxonomy
    • Algorithms73
    • Computer programming73
    • Data structures73
    • Programming languages73
    • Software development73
    • Software engineering73
    • Comparative transcriptomics42
    • Transcriptome42
    • Transcriptomics42
    • Exomes41
    • Genome annotation41
    • Genomes41
    • Genomics41
    • Personal genomics41
    • Synthetic genomics41
    • Viral genomics41
    • Whole genomes41
    • Biodiversity40
    • Bottom-up proteomics39
    • Discovery proteomics39
    • MS-based targeted proteomics39
    • MS-based untargeted proteomics39
    • Metaproteomics39
    • Peptide identification39
    • Protein and peptide identification39
    • Proteomics39
    • Quantitative proteomics39
    • Targeted proteomics39
    • Top-down proteomics39
    • Assembly33
    • Sequence assembly33
    • Bayesian methods32
    • Biostatistics32
    • Descriptive statistics32
    • Gaussian processes32
    • Inferential statistics32
    • Markov processes32
    • Multivariate statistics32
    • Probabilistic graphical model32
    • Probability32
    • Statistics32
    • Statistics and probability32
    • Biological sequences30
    • Sequence analysis30
    • Sequence databases30
    • Computational ecology29
    • Ecoinformatics29
    • Ecological informatics29
    • Ecology29
    • Ecosystem science29
    • Metagenomics27
    • Shotgun metagenomics27
    • Community analysis26
    • Environmental microbiology26
    • Microbial ecology26
    • Microbiome26
    • Molecular community analysis26
    • Diffraction experiment20
    • Imaging20
    • Microscopy20
    • Microscopy imaging20
    • Optical super resolution microscopy20
    • Photonic force microscopy20
    • Photonic microscopy20
    • Antimicrobial stewardship18
    • Medical microbiology18
    • Microbial genetics18
    • Microbial physiology18
    • Microbial surveillance18
    • Microbiological surveillance18
    • Microbiology18
    • Molecular infection biology18
    • Molecular microbiology18
    • DNA variation17
    • Genetic variation17
    • Genomic variation17
    • Mutation17
    • Polymorphism17
    • Somatic mutations17
    • Epigenomics13
    • Exometabolomics11
    • LC-MS-based metabolomics11
    • MS-based metabolomics11
    • MS-based targeted metabolomics11
    • MS-based untargeted metabolomics11
    • Mass spectrometry-based metabolomics11
    • Metabolites11
    • Metabolome11
    • Metabolomics11
    • Metabonomics11
    • NMR-based metabolomics11
    • Computational chemistry9
    • Evolution8
    • Evolutionary biology8
    • Epidemiology6
    • Public health6
    • Public health and epidemiology6
    • Communicable disease5
    • DNA metabarcoding5
    • Show N_FILTERS more
    • Tool
    • Galaxy15
    • taxonomy_krona_chart9
    • FastQC5
    • MetaPhlAn4
    • MultiQC4
    • fastp4
    • kraken24
    • KrakenTools3
    • Newick Utilities3
    • mothur3
    • BEDTools2
    • Cutadapt2
    • GraPhlAn2
    • HUMAnN22
    • SortMeRNA2
    • export2graphlan2
    • humann2
    • ABRicate1
    • BCFtools1
    • BamTools1
    • Bandage1
    • Bracken1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • Combine Metaphlan and HUMAnN1
    • FASTX-Toolkit1
    • FastTree1
    • FlashLFQ1
    • Flye1
    • Infernal1
    • Krona1
    • MAPseq1
    • MLST1
    • Medaka1
    • Minimap21
    • NanoPlot1
    • PRINSEQ1
    • SAMtools1
    • SeqPrep1
    • Trimmomatic1
    • Unipept1
    • ampvis1
    • biomformat1
    • bx-python1
    • cmsearch-deoverlap1
    • dada21
    • ggplot21
    • lotus21
    • metaQuantome1
    • msConvert1
    • phyloseq1
    • Show N_FILTERS more
    • Content provider
    • GTN15
    • Show N_FILTERS more
    • Keyword
    • microgalaxy14
    • Microbiome12
    • 16S4
    • metabarcoding4
    • Proteomics3
    • metagenomics3
    • metatranscriptomics2
    • microbiome2
    • nanopore2
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • amplicon1
    • beer1
    • citizen science1
    • cyoa1
    • plants1
    • taxonomic abundance1
    • taxonomic profiling1
    • taxonomy1
    • Show N_FILTERS more
    • Competency level
    • Beginner12
    • Intermediate3
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International15
    • Show N_FILTERS more
    • Target audience
    • Students15
    • Show N_FILTERS more
    • Author
    • Bérénice Batut9
    • Pratik Jagtap5
    • Saskia Hiltemann5
    • Subina Mehta5
    • Emma Leith4
    • Paul Zierep3
    • Praveen Kumar3
    • Timothy J. Griffin3
    • Dave Clements2
    • Engy Nasr2
    • Marie Crane2
    • Ray Sajulga2
    • Clemens Blank1
    • Cristóbal Gallardo1
    • James Johnson1
    • Polina Polunina1
    • Rand Zoabi1
    • Siyu Chen1
    • Sophia Hampe1
    • Teresa Müller1
    • Xenia Morera Martínez1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann
    • Bérénice Batut13
    • Helena Rasche11
    • Björn Grüning9
    • Paul Zierep6
    • Cristóbal Gallardo4
    • Deepti Varshney3
    • Engy Nasr3
    • Melanie Föll3
    • Niall Beard3
    • Nicola Soranzo3
    • Subina Mehta3
    • Tristan Reynolds3
    • Anna Syme2
    • Christine Oger2
    • Igor Makunin2
    • Mallory Freeberg2
    • Michael Thang2
    • Teresa Müller2
    • William Durand2
    • Beatriz Serrano-Solano1
    • Bert Droesbeke1
    • Clea Siguret1
    • Daniel Blankenberg1
    • Gildas Le Corguillé1
    • Hans-Rudolf Hotz1
    • Linelle Abueg1
    • Lucille Delisle1
    • Matthias Bernt1
    • Nate Coraor1
    • Nuwan Goonasekera1
    • Pavankumar Videm1
    • Pratik Jagtap1
    • Santino Faack1
    • Siyu Chen1
    • Tarnima Omara1
    • Willem de Koning1
    • Wolfgang Maier1
    • Xenia Morera Martínez1
    • Show N_FILTERS more
    • Resource type
    • e-learning15
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets15
    • Associated Workflows15
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email
  • Harvest using OAI-PMH

Email Subscription

Harvest using OAI-PMH

Exchange content using OAI-PMH

Use an OAI-PMH compatible tool to harvest metadata using the OAI-PMH endpoint. In particular, this endpoint can be used for exchanging content between different TeSS instances. See the TeSS documentation for more details.

Contributors: Saskia Hiltemann

and Scientific topics: Taxonomy

15 materials found
  • ELIXIR TeSS

    e-learning

    16S Microbial analysis with Nanopore data

    • Beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy nanopore …
  • ELIXIR TeSS

    e-learning

    Metatranscriptomics analysis using microbiome RNA-seq data

    • Beginner
    Metagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy
  • ELIXIR TeSS

    e-learning

    metaQuantome 3: Taxonomy

    •• Intermediate
    Proteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics Taxonomy Proteomics microgalaxy
  • ELIXIR TeSS

    e-learning

    metaQuantome 1: Data creation

    •• Intermediate
    Proteomics Proteogenomics Biodiversity Taxonomy Proteomics microgalaxy
  • ELIXIR TeSS

    e-learning

    Metaproteomics tutorial

    • Beginner
    Proteomics Proteogenomics Biodiversity Taxonomy Proteomics microgalaxy
  • 1
  • 2
Training eSupport System
[email protected]
Contribute
About TeSSHub
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSSHub has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.