Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Transcriptomics
    • Algorithms72
    • Computer programming72
    • Data structures72
    • Programming languages72
    • Software development72
    • Software engineering72
    • Comparative transcriptomics42
    • Transcriptome42
    • Exomes41
    • Genome annotation41
    • Genomes41
    • Genomics41
    • Personal genomics41
    • Synthetic genomics41
    • Viral genomics41
    • Whole genomes41
    • Biodiversity40
    • Bottom-up proteomics34
    • Discovery proteomics34
    • MS-based targeted proteomics34
    • MS-based untargeted proteomics34
    • Metaproteomics34
    • Peptide identification34
    • Protein and peptide identification34
    • Proteomics34
    • Quantitative proteomics34
    • Targeted proteomics34
    • Top-down proteomics34
    • Assembly32
    • Sequence assembly32
    • Bayesian methods31
    • Biostatistics31
    • Descriptive statistics31
    • Gaussian processes31
    • Inferential statistics31
    • Markov processes31
    • Multivariate statistics31
    • Probabilistic graphical model31
    • Probability31
    • Statistics31
    • Statistics and probability31
    • Biological sequences30
    • Sequence analysis30
    • Sequence databases30
    • Computational ecology29
    • Ecoinformatics29
    • Ecological informatics29
    • Ecology29
    • Ecosystem science29
    • Metagenomics26
    • Shotgun metagenomics26
    • Community analysis25
    • Environmental microbiology25
    • Microbial ecology25
    • Microbiome25
    • Molecular community analysis25
    • Antimicrobial stewardship18
    • Diffraction experiment18
    • Imaging18
    • Medical microbiology18
    • Microbial genetics18
    • Microbial physiology18
    • Microbial surveillance18
    • Microbiological surveillance18
    • Microbiology18
    • Microscopy18
    • Microscopy imaging18
    • Molecular infection biology18
    • Molecular microbiology18
    • Optical super resolution microscopy18
    • Photonic force microscopy18
    • Photonic microscopy18
    • DNA variation17
    • Genetic variation17
    • Genomic variation17
    • Mutation17
    • Polymorphism17
    • Somatic mutations17
    • Taxonomy14
    • Epigenomics13
    • Exometabolomics11
    • LC-MS-based metabolomics11
    • MS-based metabolomics11
    • MS-based targeted metabolomics11
    • MS-based untargeted metabolomics11
    • Mass spectrometry-based metabolomics11
    • Metabolites11
    • Metabolome11
    • Metabolomics11
    • Metabonomics11
    • NMR-based metabolomics11
    • Computational chemistry8
    • Evolution8
    • Evolutionary biology8
    • Epidemiology6
    • Public health6
    • Public health and epidemiology6
    • Communicable disease5
    • DNA metabarcoding5
    • Show N_FILTERS more
    • Tool
    • Galaxy31
    • FastQC5
    • MultiQC5
    • HISAT24
    • RSeQC4
    • SAMtools4
    • STAR4
    • BEDTools3
    • Cutadapt3
    • DESeq23
    • GOseq3
    • Salmon3
    • anndata3
    • ggplot23
    • Biopython2
    • DeepTools2
    • DropletUtils2
    • Falco2
    • FeatureCounts2
    • Heinz2
    • R2
    • SCANPY2
    • Trimmomatic2
    • UMI-tools2
    • annotatemyids2
    • Alevin1
    • ChiRA1
    • GOEnrichment1
    • IsoformSwitchAnalyzeR1
    • MEME1
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC1
    • Peakachu1
    • PfamScan1
    • RCAS1
    • SRA Software Toolkit1
    • StringTie1
    • Subread1
    • Targetfinder.org1
    • Trim Galore1
    • Trinity1
    • blockbuster1
    • fastp1
    • gffcompare1
    • gffread1
    • limma1
    • miRDeep21
    • pathview1
    • pyGenomeTracks1
    • rnaQUAST1
    • Show N_FILTERS more
    • Content provider
    • GTN41
    • Glittr.org1
    • Show N_FILTERS more
    • Keyword
    • Transcriptomics28
    • Single Cell14
    • MIGHTS5
    • paper-replication5
    • work-in-progress4
    • QC3
    • bulk3
    • collections3
    • mouse3
    • rna-seq3
    • 10x2
    • cyoa2
    • interactive-tools2
    • Galaxy1
    • Next generation sequencing1
    • PCA1
    • RNA-seq1
    • Variant analysis1
    • alternative splicing1
    • clustering1
    • deutsch1
    • drosophila1
    • español1
    • isoform switching1
    • italiano1
    • jupyter-notebook1
    • limma-voom1
    • metatranscriptomics1
    • miRNA1
    • network analysis1
    • plants1
    • stress tolerance1
    • transcriptomics1
    • viz1
    • Show N_FILTERS more
    • Competency level
    • Beginner37
    • Intermediate3
    • Advanced1
    • Not specified1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International41
    • License Not Specified1
    • Show N_FILTERS more
    • Target audience
    • Students41
    • Show N_FILTERS more
    • Author
    • Mehmet Tekman9
    • Maria Doyle7
    • Bérénice Batut6
    • Pavankumar Videm6
    • Wendi Bacon5
    • Anika Erxleben3
    • Anthony Bretaudeau3
    • Mallory Freeberg3
    • Alex Ostrovsky2
    • Andrea Bagnacani2
    • Anne Siegel2
    • Belinda Phipson2
    • Chao Zhang2
    • Cristóbal Gallardo2
    • Hans-Rudolf Hotz2
    • Harriet Dashnow2
    • Julia Jakiela2
    • Lucille Delisle2
    • Mateo Boudet2
    • Mo Heydarian2
    • Nicola Soranzo2
    • Olivier Dameron2
    • Xavier Garnier2
    • Anna Trigos1
    • Anton Nekrutenko1
    • Beatriz Serrano-Solano1
    • Casper de Visser1
    • Charity Law1
    • Charlotte Adang1
    • Clemens Blank1
    • Daniel Blankenberg1
    • Daniel Maticzka1
    • Diana Chiang Jurado1
    • Erasmus Medical Center1
    • Erwan Corre1
    • Florian Heyl1
    • Fotis E. Psomopoulos1
    • Gildas Le Corguillé1
    • Graham Etherington1
    • Helena Rasche1
    • IGC Bioinformatics Unit1
    • Iacopo Cristoferi1
    • Jonathan Manning1
    • Jovana Maksimovic1
    • Marek Ostaszewski1
    • Markus Wolfien1
    • Matt Ritchie1
    • Matti Hoch1
    • Myrthe van Baardwijk1
    • Peter van Heusden1
    • Peter-Bram 't Hoen1
    • Sanne Abeln1
    • Saskia Hiltemann1
    • Shian Su1
    • Sofoklis Keisaris1
    • Toby Hodges1
    • Wolfgang Maier1
    • Xi Liu1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann
    • Helena Rasche43
    • Björn Grüning37
    • Mehmet Tekman19
    • Bérénice Batut18
    • Nicola Soranzo18
    • Pavankumar Videm14
    • Wendi Bacon14
    • Cristóbal Gallardo11
    • Maria Doyle10
    • Anthony Bretaudeau9
    • Canadian Bioinformatics Workshops9
    • Hannah Lyman9
    • Geert van Geest8
    • Gildas Le Corguillé8
    • Lucille Delisle8
    • Will Gammerdinger8
    • Martin Čech7
    • Niall Beard7
    • Radhika Khetani7
    • Hugo Tavares6
    • Jihe Liu6
    • Meeta Mistry6
    • Abigail Edwards5
    • Julia Jakiela5
    • Matt Settles5
    • William Durand5
    • Amélie Julé4
    • Armin Dadras4
    • AshKernow4
    • Beatriz Serrano-Solano4
    • Julien Roux4
    • Mallory Freeberg4
    • Miguel Cardoso4
    • Simon Bray4
    • The Gulbenkian Training Programme in Bioinformatics4
    • ahmedmahfouz4
    • bpdurbin4
    • jessyjli4
    • marypiper4
    • msimoneau4
    • Ally Hawkins3
    • Amirhossein Naghsh Nilchi3
    • Charlotte Soneson3
    • Deepak Tanwar3
    • Emma Dann3
    • Florian Heyl3
    • Hans-Rudolf Hotz3
    • Heather Gibling3
    • Ilya Sytchev3
    • Jaclyn Taroni3
    • Jcarlevaro3
    • Jen O'Malley3
    • Joshua Shapiro3
    • Lukas Heumos3
    • Lukas Weber3
    • Marisa Loach3
    • Marius van den Beek3
    • Pablo Moreno3
    • Philipp A.3
    • Stefano Mangiola3
    • Stephanie J. Spielman3
    • Stéphanie Robin3
    • TaniaW3
    • Teresa Müller3
    • Wolfgang Maier3
    • Xavier Garnier3
    • eberdan3
    • hwick3
    • zhibinlu3
    • Åsa Björklund3
    • Alexandru Mahmoud2
    • Andrea Bagnacani2
    • Anika Erxleben2
    • Anna Schaar2
    • Benedetta Manzato2
    • Candace Savonen2
    • Christopher Bottoms2
    • CicoZhang2
    • Darío Hereñú2
    • David López2
    • Eija Korpelainen2
    • Elizabeth Partan2
    • Federico Marini2
    • Giovanni Palla2
    • Gregor Sturm2
    • Isaac Virshup2
    • Isabel Duarte2
    • Jonathan Manning2
    • Jose Alejandro Romero Herrera2
    • Kelsy Cotto2
    • Laurent Gatto2
    • Luca Cozzuto2
    • Malachi Griffith2
    • MalteDLuecken2
    • Maria Lehtivaara2
    • Mark Robinson2
    • Martin Emons2
    • Matthias Bernt2
    • Mohammed2
    • Show N_FILTERS more
    • Resource type
    • e-learning35
    • slides6
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets36
    • Associated Workflows29
    • Jupyter Notebook (with Solutions)1
    • Jupyter Notebook (without Solutions)1
    • Show N_FILTERS more
    • Node
    • Switzerland1
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Transcriptomics

and Contributors: Saskia Hiltemann

42 materials found
  • e-learning

    RNA-Seq analysis with AskOmics Interactive Tool

    • Beginner
    Transcriptomics Transcriptomics
  • e-learning

    Network analysis with Heinz

    • Beginner
    Transcriptomics Transcriptomics metatranscriptomics network analysis
  • e-learning

    Whole transcriptome analysis of Arabidopsis thaliana

    • Beginner
    Transcriptomics Transcriptomics miRNA plants stress tolerance
  • e-learning

    De novo transcriptome reconstruction with RNA-Seq

    • Beginner
    Transcriptomics Transcriptomics
  • e-learning

    Visualization of RNA-Seq results with Volcano Plot

    • Beginner
    Transcriptomics Transcriptomics
  • e-learning

    De novo transcriptome assembly, annotation, and differential expression analysis

    • Beginner
    Transcriptomics Transcriptomics
  • e-learning

    Visualization of RNA-Seq results with Volcano Plot in R

    •• Intermediate
    Transcriptomics Transcriptomics interactive-tools
  • e-learning

    Pre-processing of 10X Single-Cell RNA Datasets

    • Beginner
    Transcriptomics 10x Single Cell
  • e-learning

    Pre-processing of Single-Cell RNA Data

    • Beginner
    Transcriptomics Single Cell work-in-progress
  • e-learning

    CLIP-Seq data analysis from pre-processing to motif detection

    • Beginner
    Transcriptomics Transcriptomics
  • 1
  • 2
  • 3
  • 4
  • 5
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.