Training materials
-
e-learning
Assembly of the mitochondrial genome from PacBio HiFi reads
• BeginnerSequence assembly Genomics Biodiversity Mitochondria Assembly biodiversity -
e-learning
Calculating α and β diversity from microbiome taxonomic data
• BeginnerMetagenomics Microbial ecology Microbiome diversity metagenomics -
slides
Single-cell Formats and Resources
• BeginnerSingle Cell -
e-learning
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
• BeginnerSequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology Sequence analysis bacteria illumina microgalaxy -
e-learning
Identification of the micro-organisms in a beer using Nanopore sequencing
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome beer citizen science metagenomics microgalaxy nanopore -
e-learning
Taxonomic Profiling and Visualization of Metagenomic Data
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome metagenomics microgalaxy taxonomic profiling -
e-learning
Fine tune large protein model (ProtTrans) using HuggingFace
• BeginnerStatistics and probability Statistics and machine learning deep-learning dephosphorylation-site-prediction fine-tuning interactive-tools jupyter-lab machine-learning -
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• BeginnerMIGHTS Single Cell jupyter-notebook paper-replication -
e-learning
Bacterial Genome Annotation
• BeginnerGenomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod … -
e-learning
ERGA post-assembly QC
• BeginnerSequence assembly Genomics Biodiversity Assembly QC animals assembly biodiversity genome plants