Training materials
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e-learning
Hybrid genome assembly - Nanopore and Illumina
• BeginnerSequence assembly Assembly assembly denovo genomics illumina nanopore -
slides
Genome assembly and assembly QC - Introduction short version
• BeginnerSequence assembly Assembly -
e-learning
Decontamination of a genome assembly
• BeginnerSequence assembly Genomics Biodiversity Assembly biodiversity -
e-learning
Assembly of the mitochondrial genome from PacBio HiFi reads
• BeginnerSequence assembly Genomics Biodiversity Mitochondria Assembly biodiversity -
e-learning
ERGA post-assembly QC
• BeginnerSequence assembly Genomics Biodiversity Assembly QC animals assembly biodiversity genome plants -
e-learning
Large genome assembly and polishing
• BeginnerSequence assembly Genomics Biodiversity Assembly assembly biodiversity nanopore plants polishing -
slides
Genome assembly quality control.
• BeginnerSequence assembly Assembly -
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• BeginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy … -
e-learning
Chloroplast genome assembly
• BeginnerSequence assembly Assembly biodiversity jbrowse1 nanopore plants -
e-learning
Making sense of a newly assembled genome
• BeginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote
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