Materials - TeSS (Training eSupport System)

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- Scientific topic
- Algorithms49
- Computer programming49
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- Software engineering49
- Biodiversity35
- Comparative transcriptomics34
- Transcriptome34
- Transcriptomics34
- Biological sequences33
- Sequence analysis33
- Sequence databases33
- Exomes31
- Genome annotation31
- Genomes31
- Genomics31
- Personal genomics31
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- Viral genomics31
- Whole genomes31
- Computational ecology30
- Ecoinformatics30
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- Ecology30
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- Community analysis27
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- Microbial ecology27
- Microbiome27
- Molecular community analysis27
- Metagenomics25
- Shotgun metagenomics25
- Bayesian methods22
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- Gaussian processes22
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- Probability22
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- Statistics and probability22
- Data management20
- Metadata management20
- Research data management (RDM)20
- Antimicrobial stewardship19
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- MS-based targeted proteomics19
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- Medical microbiology19
- Metaproteomics19
- Microbial genetics19
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- Microbiology19
- Molecular infection biology19
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- Protein and peptide identification19
- Proteomics19
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- Top-down proteomics19
- Assembly16
- Sequence assembly16
- Taxonomy15
- DNA variation10
- FAIR data10
- Findable, accessible, interoperable, reusable data10
- Genetic variation10
- Genomic variation10
- Mutation10
- Polymorphism10
- Somatic mutations10
- Epigenomics8
- DNA metabarcoding7
- Diffraction experiment7
- Environmental metabarcoding7
- Imaging7
- Metabarcoding7
- Microscopy7
- Microscopy imaging7
- Optical super resolution microscopy7
- Photonic force microscopy7
- Photonic microscopy7
- RNA metabarcoding7
- eDNA metabarcoding7
- eRNA metabarcoding7
- De novo genome sequencing6
- Genome sequencing6
- Virology6
- WGS6
- Whole genome resequencing6
- Whole genome sequencing6
- Biomimeic chemistry5
- Epidemiology5
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- Operation
- Data extraction3
- Data handling3
- Data retrieval3
- Data retrieval (metadata)3
- Database search3
- File handling3
- File processing3
- Metadata retrieval3
- Processing3
- Report handling3
- Retrieval3
- Search3
- Utility operation3
- Data formatting1
- Data reformatting1
- Database retrieval1
- File format conversion1
- File formatting1
- File reformatting1
- Format conversion1
- Query1
- Query and retrieval1
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- Tool
- Galaxy235
- FastQC24
- MultiQC17
- SAMtools16
- BWA14
- BEDTools13
- Falco12
- SCANPY12
- scikit-learn11
- BLAST10
- fastp10
- DeepTools9
- taxonomy_krona_chart9
- Cutadapt8
- ggplot28
- Bandage7
- FreeBayes7
- GEMINI7
- Trimmomatic7
- FASTX-Toolkit6
- NanoPlot6
- QUAST6
- RStudio6
- BamTools5
- Flye5
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- anndata5
- kraken25
- Biopython4
- Bowtie 24
- Diamond4
- Galaxy Image Analysis4
- HISAT24
- JBrowse4
- KrakenTools4
- MaxQuant4
- MetaPhlAn4
- Minimap24
- STAR4
- annotatemyids4
- bx-python4
- mothur4
- scikit-image4
- BCFtools3
- BUSCO3
- Bracken3
- Bwa-mem23
- DESeq23
- DropletUtils3
- GOseq3
- MACS3
- MAFFT3
- MSstats3
- Newick Utilities3
- Salmon3
- Stacks3
- Trim Galore3
- Unicycler3
- Workflow4Metabolomics3
- msConvert3
- seqtk3
- snpEff3
- Bakta2
- Cardinal2
- Clustal 1.8 (Clustal W, Clustal X)2
- FastTree2
- GOEnrichment2
- Galactic Circos2
- GenomeScope 2.02
- GraPhlAn2
- HUMAnN22
- InterProScan (EBI)2
- MEME2
- Medaka2
- Open Babel2
- R2
- RSeQC2
- Racon2
- Recentrifuge2
- RepeatMasker2
- SRA Software Toolkit2
- SeqCode2
- SortMeRNA2
- UMI-tools2
- UniProt2
- Vcflib2
- ViralZone2
- compute_sequence_length2
- export2graphlan2
- gfastats2
- humann2
- lofreq2
- lotus22
- pilon2
- staramr2
- tbl2gff32
- xcms2
- ABRicate1
- Alevin1
- Bowtie1
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- Standard database or policy
- Ontology Lookup Service2
- Cellosaurus1
- ModelArchive1
- PRoteomics IDEntifications database1
- Resource Identification Portal 1
- The European Genome-phenome Archive1
- UniProt Knowledgebase1
- Worldwide Protein Data Bank1
- Zenodo 1
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- Content provider
- GTN410
- SIB Swiss Institute of Bioinformatics17
- NBIS9
- VIB Training & Conferences6
- Danish National Health Data Science Sandbox2
- ELIXIR2
- DTLS - Dutch Techcentre For Life Sciences1
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- Keyword
- Galaxy Server administration38
- biodiversity35
- microgalaxy33
- Single Cell32
- Ecology30
- Foundations of Data Science29
- jupyter-notebook29
- Microbiome25
- FAIR Data, Workflows, and Research23
- Contributing to the Galaxy Training Material21
- Transcriptomics21
- Statistics and machine learning20
- ansible20
- Proteomics19
- git-gat18
- Development in Galaxy16
- fair16
- interactive-tools16
- Genome Annotation15
- Teaching and Hosting Galaxy training14
- Using Galaxy and Managing your Data14
- earth-system14
- Climate13
- Introduction to Galaxy Analyses13
- work-in-progress13
- Assembly12
- paper-replication12
- Data management11
- MIGHTS11
- Variant Analysis10
- data stewardship10
- plants10
- CONVERGE9
- FAIR9
- Sequence analysis9
- ocean9
- prokaryote9
- Epigenetics8
- Galaxy Community Building8
- cyoa8
- gmod8
- label-free8
- DDA7
- EBV dataset7
- EBV workflow7
- assembly7
- data management7
- dmp7
- español7
- jbrowse17
- metabarcoding7
- metagenomics7
- nanopore7
- deutsch6
- ecology6
- elixir6
- illumina6
- italiano6
- train-the-trainers6
- transcriptomics6
- 10x5
- 16S5
- Imaging5
- Metabolomics5
- SARS-CoV-25
- deploying5
- jobs5
- label-TMT115
- mouse5
- ro-crate5
- Community4
- Interoperability4
- QC4
- SIG4
- Synthetic Biology4
- bacteria4
- covid194
- diversity4
- genetic composition EBV class4
- pangeo4
- storage4
- taxonomic profiling4
- workflows4
- Bioimaging3
- ChIP-seq3
- Digital Humanities3
- Image segmentation3
- Metadata3
- Open science3
- Overlay3
- R3
- RAD-seq3
- RStudio3
- Rare Diseases & Research3
- Standards3
- amr3
- bulk3
- collections3
- data import3
- deep-learning3
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- Competency level
- Beginner
- Not specified121
- Intermediate120
- Advanced24
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- Licence
- Creative Commons Attribution 4.0 International424
- Creative Commons Attribution Share Alike 4.0 International15
- License Not Specified7
- Creative Commons Attribution Non Commercial Share Alike 4.0 International2
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International1
- MIT License1
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- Target audience
- Students313
- Galaxy Administrators54
- Instructors43
- PhD candidates9
- Researcher in life sciences9
- Scientists9
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Bioinformaticians4
- Bench biologists3
- Biologists3
- Biologists with little or no prior computational experience3
- biologists3
- Bioinformaticians, Biologists with little or no prior computational experience.2
- Laboratory technicians2
- Life Science Researchers2
- Patient Advocates 2
- Researchers2
- Veterinarians2
- rare disease patients representatives1
- Anyone dealing with cell lines with no or little knowledge of the Cellosaurus resource.1
- Anyone wishing to interpret graphs showing the progression of COVID-19.1
- Biologists and bioinformaticians1
- Biomedical Researchers1
- Biomedical researchers1
- Biotechnology Companies1
- Clinical Scientists1
- Data Managers1
- Data Scientists1
- Graduate Students1
- Life scientists with no or little knowledge of the ISMARA tool.1
- Research Scientists1
- Students, postdocs, and researchers, from any scientific environment (academia, facilities, companies, etc.) interested in viral data, as well as anyone looking for virion and viral genome images for use in teaching or publications.1
- beginner1
- beginner bioinformaticians1
- biocurators1
- scientists1
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- Author
- Bérénice Batut72
- Helena Rasche67
- Saskia Hiltemann33
- Yvan Le Bras24
- Björn Grüning23
- Anton Nekrutenko21
- Marie Josse18
- Wendi Bacon18
- Katarzyna Kamieniecka16
- Krzysztof Poterlowicz16
- Subina Mehta16
- Fotis E. Psomopoulos15
- Bazante Sanders14
- Nicola Soranzo14
- Simon Gladman14
- Monique Zahn13
- The Carpentries13
- Julia Jakiela12
- Katherine Do12
- Mehmet Tekman12
- Anne Fouilloux11
- Paul Zierep11
- Donny Vrins10
- Khaled Jum'ah10
- Maria Doyle10
- Pavankumar Videm10
- Anup Kumar9
- James Johnson9
- Nate Coraor9
- Anthony Bretaudeau8
- Anika Erxleben7
- Dave Clements7
- Delphine Lariviere7
- Laura Cooper7
- Marius van den Beek7
- Robert Andrews7
- Wolfgang Maier7
- Allegra Via6
- Andrew Mason6
- Branka Franicevic6
- Coline Royaux6
- Cristóbal Gallardo6
- ELIXIR Goblet Train the Trainers6
- Lucille Delisle6
- Patricia Palagi6
- Philippe Rocca-Serra6
- Sara Morsy6
- Valentin Loux6
- Xenia Perez Sitja6
- Anna Syme5
- Clemens Blank5
- Daniel Blankenberg5
- Dechen Bhuming5
- Joachim Wolff5
- Kellie Snow5
- Korneel Hens5
- Melanie Föll5
- Munazah Andrabi5
- Nick Juty5
- Saskia Lawson-Tovey5
- Alireza Khanteymoori4
- Amirhossein Naghsh Nilchi4
- Diana Chiang Jurado4
- Hélène Chiapello4
- Kaivan Kamali4
- Keiler Collier4
- Mallory Freeberg4
- Marisa Loach4
- Mira Kuntz4
- Morgan Howells4
- Pratik Jagtap4
- Simon Bray4
- Simone Leo4
- Solenne Correard4
- Tristan Reynolds4
- Vivek Bhardwaj4
- Alex Ostrovsky3
- Anne Pajon3
- Avans Hogeschool3
- Beatriz Serrano-Solano3
- Belinda Phipson3
- Daniela Schneider3
- Emma Leith3
- Erik Hedman3
- Erwan Corre3
- Fidel Ramirez3
- Florian Christoph Sigloch3
- Florian Heyl3
- Gianmauro Cuccuru3
- Gildas Le Corguillé3
- Guillaume Gricourt3
- Hans-Rudolf Hotz3
- Ioana Popescu3
- Jean-Loup Faulon3
- Joan Hérisson3
- John Chilton3
- John Davis3
- Kenza Bazi-Kabbaj3
- Laila Los3
- Leonid Kostrykin3
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- Contributor
- Saskia Hiltemann366
- Helena Rasche310
- Björn Grüning259
- Bérénice Batut150
- Nicola Soranzo99
- Martin Čech80
- Anthony Bretaudeau58
- Niall Beard58
- Wendi Bacon57
- Armin Dadras52
- Nate Coraor50
- Gildas Le Corguillé42
- Marius van den Beek41
- Teresa Müller39
- Cristóbal Gallardo38
- Yvan Le Bras38
- Mehmet Tekman37
- Lucille Delisle36
- Marie Josse36
- Pavankumar Videm34
- Simon Gladman33
- William Durand33
- Wolfgang Maier25
- Beatriz Serrano-Solano24
- Maria Doyle21
- Julia Jakiela19
- Khaled Jum'ah17
- Tristan Reynolds17
- Anup Kumar15
- Paul Zierep15
- Anne Fouilloux14
- Deepti Varshney14
- Donny Vrins14
- Bazante Sanders13
- Melanie Föll13
- Pratik Jagtap13
- Simon Bray13
- Marisa Loach12
- Pablo Moreno12
- Subina Mehta12
- Timothy J. Griffin12
- Daniela Schneider11
- David López11
- Matthias Bernt11
- Mira Kuntz11
- Peter van Heusden11
- Anton Nekrutenko10
- Delphine Lariviere10
- Gianmauro Cuccuru10
- Mélanie Petera10
- Katarzyna Kamieniecka9
- Paul De Geest9
- Elin Kronander8
- Verena Moosmann8
- Wolmar Nyberg Åkerström8
- Amirhossein Naghsh Nilchi7
- Katherine Do7
- Leonid Kostrykin7
- Markus Englund7
- Mattias Strömberg7
- Stephan Nylinder7
- Yvonne Kallberg7
- Anna Syme6
- Erik Hedman6
- Hans-Rudolf Hotz6
- Morgan Howells6
- Niclas Jareborg6
- Alireza Khanteymoori5
- Bert Droesbeke5
- Diana Chiang Jurado5
- Ekaterina Polkh5
- Florian Heyl5
- John Davis5
- Kaivan Kamali5
- Solenne Correard5
- Tomas Klingström5
- Clea Siguret4
- Coline Royaux4
- Eli Chadwick4
- Enis Afgan4
- Fotis E. Psomopoulos4
- John Chilton4
- Mallory Freeberg4
- Stéphanie Robin4
- Vassilios Ioannidis4
- Alex Ostrovsky3
- Clemens Blank3
- Dave Clements3
- Engy Nasr3
- Keiler Collier3
- Krzysztof Poterlowicz3
- Mateusz Kuzak3
- Miaomiao Zhou3
- Nuwan Goonasekera3
- Phil Reed3
- Riccardo Massei3
- Sofoklis Keisaris3
- Ahmed Hamid Awan2
- Alexandre Cormier2
- Andrea Bagnacani2
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- Resource type
- e-learning
- slides140
- Training materials48
- Video44
- lessons35
- Presentation31
- Slidedeck29
- Tutorial22
- Lecture16
- Slides16
- hands-on tutorial16
- course materials13
- Webinar8
- Documentation7
- video7
- Course materials5
- E-learning5
- Bioinformatics4
- Exercise4
- Online material4
- PDF4
- Scripts4
- Coding3
- Handout3
- tutorial3
- youtube video3
- Series of videos2
- Computational Biology2
- E-Learning2
- Installation instructions2
- Jupyter notebook2
- Learning pathway2
- Manual2
- Vignette2
- online course2
- online tutorial2
- scripts2
- slideck/ presentation2
- API reference1
- Book1
- Carpentries style curriculum1
- Computer Science1
- Computer Software1
- Data Science1
- Education1
- Jupyter notebooks1
- Life Science Literature Database1
- Life Sciences Literature Database1
- Metadata Registry1
- Mock data1
- Open educational resource1
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- Recorded webinar1
- Recording1
- Toolkit1
- Training materials with mock data1
- ViralZone1
- educational materials1
- examples1
- hackathon1
- slides / presentation1
- tutorials1
- workflow1
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- Related resource
- Associated Training Datasets210
- Associated Workflows196
- Jupyter Notebook (with Solutions)26
- Jupyter Notebook (without Solutions)26
- The Carpentries7
- Quarto/RMarkdown Notebook3
- GitHub1
- OpenCloning1
- OpenRefine1
- pydna1
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- Switzerland17
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- United Kingdom2
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- Collection
- ELIXIR Biodiversity Community5
- Elements of Data Management5
- SARS-CoV-2 : Studying a new virus5
- 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
- ELIXIR hCNV community - collection of courses and materials.1
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- Active30
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e-Learning

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450 e-learning materials found

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