TeSS (Training eSupport System)

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- This workshop is aimed at PhD students within the PhD programme "Genetics, Molecular and Cellular Biology" (University of Pavia) and the PhD programmme "Biomolecular Sciences and Biotechnology" (IUSS, University School for Advanced Studies Pavia.1
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- Introduction to Galaxy dataset1
- Introduction to the EGA and sharing sensitive data1
- Slides | Beacon v2: a discovery tool for genomic and pheno-clinical data1
- Slides | DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- Slides | GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Slides | Introduction to the EGA and sharing sensitive data1
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Training materials

Work flows : RNA-Seq

Analysis of RNA-Seq using the DESeq2 package

Elements of statistics 5: experimental design

Elements of statistics 4: regularisation & kernels

Elements of statistics 1: t-test and linear model

Elements of statistics 3: Classification and clustering - basic concepts

Visualization.

Best Practices for Managing R / Bioconductor Scripts

Working with Annotations

Visualisation in Statistical Genomics