TeSS (Training eSupport System)

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- The course is aimed at research scientists with a minimum of a degree in a biological discipline, including laboratory and clinical staff, as well as specialists in related fields.1
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- This workshop is aimed at PhD students within the PhD programme "Genetics, Molecular and Cellular Biology" (University of Pavia) and the PhD programmme "Biomolecular Sciences and Biotechnology" (IUSS, University School for Advanced Studies Pavia.1
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- Input datasets34
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- Assembly slides3
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- Beacon v2: a discovery tool for genomic and pheno-clinical data1
- COBRA Toolbox1
- Contributing to the Galaxy Training Material slides1
- DMPortal1
- Data Stewardship Wizard1
- DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- EGA Submitter Portal Tutorial1
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- GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Genome Annotation slides1
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- Introduction to Galaxy dataset1
- Introduction to the EGA and sharing sensitive data1
- Slides | Beacon v2: a discovery tool for genomic and pheno-clinical data1
- Slides | DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- Slides | GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Slides | Introduction to the EGA and sharing sensitive data1
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Training materials

Lecture: Computing with sequences and genomic intervals

Lecture: Epigenetics and ChIP-Seq

Lecture: RNA-Seq data analysis and differential expression part II

Lecture: RNA-Seq data analysis and differential expression part I

Lecture: Clustering and classification

Lecture: Hypothesis testing and multiple testing

Lecture: Basics of sequence alignment and aligners

Lab: Phyloseq Basic Usage for Metagenomics

Lab: Plotting Regions from BAM files directly

Lab: Performance and Parallel Evaluation