Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Transcriptome profiling
    • Genome annotation170
    • MicroRNA sequencing161
    • RNA sequencing161
    • RNA-Seq161
    • RNA-Seq analysis161
    • Small RNA sequencing161
    • Small RNA-Seq161
    • Small-Seq161
    • WTSS161
    • Whole transcriptome shotgun sequencing161
    • miRNA-seq161
    • R152
    • R program152
    • R script152
    • Exomes148
    • Genomes148
    • Genomics148
    • Personal genomics148
    • Synthetic genomics148
    • Viral genomics148
    • Whole genomes148
    • Comparative transcriptomics138
    • Transcriptome138
    • Transcriptomics138
    • High-throughput sequencing112
    • Chromosome walking111
    • Clone verification111
    • DNA-Seq111
    • DNase-Seq111
    • High throughput sequencing111
    • NGS111
    • NGS data analysis111
    • Next gen sequencing111
    • Next generation sequencing111
    • Panels111
    • Primer walking111
    • Sanger sequencing111
    • Sequencing111
    • Targeted next-generation sequencing panels111
    • Data management109
    • Metadata management109
    • Research data management (RDM)109
    • Bayesian methods94
    • Biostatistics94
    • Descriptive statistics94
    • Gaussian processes94
    • Inferential statistics94
    • Markov processes94
    • Multivariate statistics94
    • Probabilistic graphical model94
    • Probability94
    • Statistics94
    • Statistics and probability94
    • Active learning79
    • Ensembl learning79
    • Kernel methods79
    • Knowledge representation79
    • Machine learning79
    • Neural networks79
    • Recommender system79
    • Reinforcement learning79
    • Supervised learning79
    • Unsupervised learning79
    • Python72
    • Python program72
    • Python script72
    • py72
    • Single-cell genomics61
    • Single-cell sequencing61
    • FAIR data58
    • Findable, accessible, interoperable, reusable data58
    • Data rendering49
    • Data visualisation49
    • Metagenomics39
    • Shotgun metagenomics39
    • Breakend assembly38
    • Genome assembly38
    • Genomic assembly38
    • Pipelines38
    • Sequence assembly (genome assembly)38
    • Software integration38
    • Tool integration38
    • Tool interoperability38
    • Variant pattern analysis38
    • Workflows38
    • Antimicrobial stewardship33
    • Functional genome annotation33
    • Medical microbiology33
    • Metagenome annotation33
    • Microbial genetics33
    • Microbial physiology33
    • Microbial surveillance33
    • Microbiological surveillance33
    • Microbiology33
    • Molecular infection biology33
    • Molecular microbiology33
    • Structural genome annotation33
    • Bioinformatics32
    • Bottom-up proteomics29
    • Show N_FILTERS more
    • Tool
    • Bioconductor21
    • Show N_FILTERS more
    • Content provider
    • Glittr.org101
    • Bioconductor21
    • NGS Registry19
    • ERGA Knowledge Hub11
    • European Bioinformatics Institute (EBI)7
    • VIB Bioinformatics Core2
    • Show N_FILTERS more
    • Keyword
    • RNA-seq112
    • Transcriptomics94
    • Single-cell sequencing49
    • Next generation sequencing38
    • R32
    • Genomics20
    • RNA-Seq19
    • QC15
    • Alignment11
    • BAM10
    • Pre-processing10
    • Unix/Linux10
    • FASTQ9
    • General9
    • Differential-expression8
    • Expression-estimation8
    • Populus-tremula8
    • Python8
    • Variant analysis8
    • Annotation7
    • GFF37
    • Genome annotation6
    • Statistics6
    • ATAC-seq5
    • ChIP-seq5
    • Data visualization5
    • Epigenetics5
    • R-programming5
    • Reproducibility5
    • Spatial transcriptomics5
    • ChIP-Seq4
    • Data-format4
    • Pathways and Networks4
    • Statistical-model4
    • Version control4
    • Data management3
    • Experimental-design3
    • Exploratory-analysis3
    • Feature-summarisation3
    • Long read sequencing3
    • Nextflow3
    • Snakemake3
    • Containerization2
    • Data science2
    • Galaxy2
    • Genome assembly2
    • High performance computing2
    • Machine learning2
    • Multiomics2
    • Quality Control2
    • Quarto2
    • Rmarkdown2
    • Workflows2
    • Assembly1
    • Cloud computing1
    • Comparative genomics1
    • DNA-protein interaction1
    • Enrichment analysis1
    • Epigenetic modifications1
    • FAIR data1
    • FASTA1
    • Functional Genomics1
    • Histone modifications1
    • Julia1
    • Metagenomics1
    • Microarray1
    • NGS1
    • Next-generation sequencing1
    • Population genetics1
    • Proteomics1
    • RNA-protein interaction1
    • Real-time PCR1
    • Singularity1
    • Show N_FILTERS more
    • Competency level
    • Not specified
    • Intermediate7
    • Beginner5
    • Show N_FILTERS more
    • Licence
    • License Not Specified118
    • Creative Commons Attribution 4.0 International11
    • GNU General Public License v3.0 only9
    • MIT License9
    • Creative Commons Zero v1.0 Universal8
    • Creative Commons Attribution Share Alike 4.0 International3
    • Apache License 2.01
    • BSD 3-Clause "New" or "Revised" License1
    • Creative Commons Attribution Non Commercial 4.0 International1
    • Show N_FILTERS more
    • Target audience
    • PhD students3
    • Life Science Researchers2
    • post-docs2
    • Clinicians1
    • beginner bioinformaticians1
    • Show N_FILTERS more
    • Author
    • Teaching materials at the Harvard Chan Bioinformatics Core11
    • Martin Morgan9
    • Bastian Schiffthaler @bastian8
    • Nicolas Delhomme @delhomme8
    • UC Davis Bioinformatics Core Training Page8
    • bioinformatics.ca7
    • CRUK CI Bioinformatics Core5
    • NBIS - National Bioinformatics Infrastructure Sweden5
    • SIB Swiss Institute of Bioinformatics5
    • Anna Poetsch4
    • The Gulbenkian Training Programme in Bioinformatics4
    • Alex's Lemonade Stand Foundation3
    • Michael Love3
    • Simon Anders3
    • The Carpentries Incubator3
    • Health Data Science Sandbox2
    • Julien Roux2
    • Leiden Computational Biology Center2
    • @bastian1
    • @delhomme1
    • Aedin Culhane1
    • Albrectsen B.1
    • Alejandro Reyes1
    • Amarinder Singh Thind1
    • Applied Genomics1
    • Barbara Hill Meyers and Michael Reich1
    • Benilton Carvalho1
    • Bert Overduin, @bert1
    • Bioconductor1
    • Biocore@CRG1
    • Boas Pucker1
    • BrainOmicsCourse1
    • Canadian Bioinformatics Workshops1
    • Cellular Genomics Informatics1
    • Charlotte Soneson @charlotte, [email protected]1
    • Common Fund Data Ecosystem1
    • Computational Biology and Bioinformatics at UCLouvain1
    • Deplancke's Lab1
    • Eija Korpelainen @eija, [email protected]1
    • Erasmus Medical Center1
    • Fred Hutch Data Science Lab1
    • Frederik Coppens, @frcop1
    • Functional Genomics Laboratory1
    • Genome Informatics Facility1
    • Geraldine Van der Auwera1
    • Hvidsten T. R.1
    • Ingvarsson P. K.1
    • Institut Français de Bioinformatique (IFB)1
    • Jansson S.1
    • Jenny Drnevich @jenny1
    • Jessica Kirkpatrick [email protected]1
    • Julie Zhu1
    • Katharina Hoff1
    • Kelly Street1
    • Khushbu Patel1
    • Laboratory of Genomics and Bioinformatics1
    • Leonard Goldstein1
    • Melbourne Bioinformatics1
    • Michael Love et al.1
    • Mike Love1
    • Monash Data Fluency1
    • Mähler N.1
    • OSCA Source Code Management1
    • Oenskog J.1
    • Pachter Lab1
    • Python club at University of Algarve1
    • Radhika Khetani @radhika1
    • Rhonda Bacher1
    • Robinson K.1
    • Saez Lab1
    • Sonali Arora1
    • Stefano Mangiola1
    • Stephen Turner1
    • Street N. R.1
    • Sydney Informatics Hub1
    • The Griffith Lab1
    • The McDonnell Genome Institute1
    • Theis Lab1
    • Thomas Denecker1
    • Tidy-transcriptomics workshops1
    • Xueyi Dong1
    • Yunshun Chen1
    • based partially on material from Ernest Turro University of Cambridge1
    • fmicompbio1
    • gladstone-institutes1
    • instructr1
    • material-share1
    • scverse1
    • Show N_FILTERS more
    • Contributor
    • Canadian Bioinformatics Workshops8
    • Hannah Lyman8
    • Will Gammerdinger8
    • Radhika Khetani7
    • Hugo Tavares6
    • Jihe Liu6
    • Meeta Mistry6
    • Abigail Edwards5
    • Geert van Geest5
    • Amélie Julé4
    • AshKernow4
    • Maria Doyle4
    • Matt Settles4
    • Miguel Cardoso4
    • The Gulbenkian Training Programme in Bioinformatics4
    • bpdurbin4
    • jessyjli4
    • marypiper4
    • msimoneau4
    • Ally Hawkins3
    • Charlotte Soneson3
    • Ilya Sytchev3
    • Jaclyn Taroni3
    • Jen O'Malley3
    • Joshua Shapiro3
    • Julien Roux3
    • Kelsy Cotto3
    • Philipp A.3
    • Stephanie J. Spielman3
    • Teaching materials at the Harvard Chan Bioinformatics Core3
    • ahmedmahfouz3
    • eberdan3
    • hwick3
    • Åsa Björklund3
    • Alexandru Mahmoud2
    • Candace Savonen2
    • Chris Miller2
    • Darío Hereñú2
    • Deepak Tanwar2
    • Edmund Miller2
    • Elizabeth Partan2
    • Emma Dann2
    • Heather Gibling2
    • Isabel Duarte2
    • Jose Alejandro Romero Herrera2
    • Kartik Singhal2
    • Laurent Gatto2
    • Lukas Heumos2
    • Malachi Griffith2
    • Mariam Khanfar2
    • Mohammed2
    • My Hoang2
    • Noor Sohail2
    • Obi Griffith2
    • Roy Francis2
    • Salehkarim212
    • Samuele Soraggi2
    • Stefano Mangiola2
    • TaniaW2
    • Thomas Denecker2
    • Toby Hodges2
    • Upen Bhattarai2
    • Zachary Skidmore2
    • actions-user2
    • clairetn2
    • fgomez022
    • hackmd-deploy2
    • hxf1900022
    • lgeistlinger2
    • muneeryaqub2
    • sballereau2
    • syamauchi20002
    • zhibinlu2
    • Aaron Lun1
    • Abhijna Parigi1
    • Aditya Singh1
    • Adrija Kalvisa1
    • Aedin Culhane1
    • Alan O'Callaghan1
    • Alba Refoyo Martínez1
    • Alberto Valdeolivas1
    • Aleksandra E. Badaczewska-Dawid1
    • Alessia Valenti1
    • Alex Lederer1
    • Alex Predeus1
    • Alex SMITH1
    • Alexander Pico1
    • Amanda Charbonneau1
    • Amarinder Singh Thind1
    • Anders Riutta1
    • Andrew Ghazi1
    • Andrew Robinson1
    • Andrew Severin1
    • Anna Schaar1
    • Anna Syme1
    • Anthony Bretaudeau1
    • Anthony Christidis1
    • Arun Seetharam1
    • Attila Gabor1
    • Aurelien Dugourd1
    • Show N_FILTERS more
    • Resource type
    • Recorded webinar6
    • e-learning1
    • Show N_FILTERS more
    • Node
    • Switzerland112
    • United Kingdom19
    • EMBL-EBI7
    • Belgium2
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Hide materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Transcriptome profiling

and Include broken links: true

and Competency level: Not specified

161 materials found
  • Recorded webinar

    Spatial transcriptomics in action: a case study from human reproductive development

    ELIXIR node event
    Transcriptomics RNA-Seq
  • GTPB/ADER18F

    ELIXIR node event
    Sequencing Transcriptomics RNA-Seq RNA-seq Transcriptomics Next generation sequencing
  • GTPB/ADER18S

    ELIXIR node event
    Sequencing Transcriptomics RNA-Seq RNA-seq Transcriptomics Next generation sequencing
  • Recorded webinar

    Interactive visualisation of spatial transcriptomics data

    ELIXIR node event
    Transcriptomics RNA-Seq Data visualisation
  • Recorded webinar

    Mapping tissue remodelling using sequencing-based spatial transcriptomics

    ELIXIR node event
    Transcriptomics RNA-Seq
  • instructr/rnaseq_counts2bio

    ELIXIR node event
    Sequencing Transcriptomics RNA-Seq RNA-seq Transcriptomics Next generation sequencing R
  • bioinformaticsdotca/OMPRN_2024

    ELIXIR node event
    RNA-Seq Sequencing Transcriptomics Next generation sequencing RNA-seq Transcriptomics
  • bioinformaticsdotca/RNA_2025

    ELIXIR node event
    Sequencing Transcriptomics RNA-Seq RNA-seq Transcriptomics Next generation sequencing
  • bioinformaticsdotca/scRNA_2025

    ELIXIR node event
    Transcriptomics Single-cell sequencing RNA-Seq Single-cell sequencing RNA-seq Transcriptomics
  • bioinformaticsdotca/PGX_2024

    ELIXIR node event
    RNA-Seq Genomics Multiomics Multiomics RNA-seq R Genomics
  • 1
  • 2
  • 3
  • 4
  • 5
  • 6
  • 7
  • 8
  • 9
  • …
  • 16
  • 17
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.