Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Bioinformatics1
    • DNA structural variation1
    • Deletion1
    • Duplication1
    • Exomes1
    • Genome annotation1
    • Genomes1
    • Genomic structural variation1
    • Genomics1
    • Insertion1
    • Inversion1
    • Personal genomics1
    • Structural variation1
    • Synthetic genomics1
    • Translocation1
    • Viral genomics1
    • Whole genomes1
    • Show N_FILTERS more
    • Operation
    • Structural genome annotation
    • Data handling51
    • File handling51
    • File processing51
    • Processing51
    • Report handling51
    • Utility operation51
    • Data extraction16
    • Data retrieval16
    • Data retrieval (metadata)16
    • Metadata retrieval16
    • Retrieval16
    • Data analysis13
    • Data brokering10
    • Data deposition10
    • Data deposition brokering10
    • Data submission10
    • Database deposition10
    • Database submission10
    • Data management planning8
    • Data visualisation7
    • Molecular visualisation7
    • Plotting7
    • Rendering7
    • Visualisation7
    • Database retrieval6
    • Mathematical modelling6
    • Modelling and simulation6
    • Query6
    • Query and retrieval6
    • Database search4
    • Normalisation4
    • Search4
    • Standardisation4
    • Standardisation and normalisation4
    • Data formatting2
    • Data reformatting2
    • Design2
    • File format conversion2
    • File formatting2
    • File reformatting2
    • Format conversion2
    • Ontology browsing2
    • Ontology visualisation2
    • Alignment1
    • Alignment construction1
    • Alignment generation1
    • Allele calling1
    • Annotation1
    • Data editing1
    • Exome variant detection1
    • Functional genome annotation1
    • Genome annotation1
    • Genome variant detection1
    • Germ line variant calling1
    • Image analysis1
    • Metagenome annotation1
    • Mutation detection1
    • RNA-Seq analysis1
    • Read pre-processing1
    • Sequence classification1
    • Sequence read pre-processing1
    • Somatic variant calling1
    • Variant calling1
    • Variant mapping1
    • de novo mutation detection1
    • Show N_FILTERS more
    • Tool
    • PASTEClassifier1
    • REPET1
    • REXdb1
    • Show N_FILTERS more
    • Content provider
    • IFB French Institute of Bioinformatics1
    • Show N_FILTERS more
    • Keyword
    • Annotation1
    • Docker1
    • Pipelines1
    • Transposons1
    • Show N_FILTERS more
    • Competency level
    • Beginner
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution Non Commercial No Derivatives 4.0 International1
    • Show N_FILTERS more
    • Target audience
    • Bioinformatician1
    • Biologists, Genomicists, Computer Scientists1
    • Scientists1
    • Show N_FILTERS more
    • Author
    • Johann Confais1
    • Show N_FILTERS more
    • Contributor
    • INRAE1
    • Show N_FILTERS more
    • Resource type
    • Bioinformatics1
    • Training materials1
    • Tutorial1
    • Show N_FILTERS more
    • Related resource
    • REPET image Docker1
    • Show N_FILTERS more
    • Node
    • France1
    • Show N_FILTERS more
    • Status
    • Active1
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Hide archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Operations: Structural genome annotation

and Competency level: Beginner

and Include archived: true

1 material found
  • Tutorial, Training materials, Bioinformatics

    How to use REPET software for de novo annotation of transposable elements in genomes

    ELIXIR node event
    • Beginner
    Genomics Structural variation Bioinformatics Genome annotation Sequence classification Transposons Annotation Pipelines Docker
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.