TeSS (Training eSupport System)

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- Galaxy278
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- COPASI5
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- HISAT25
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- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
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- kraken25
- BUSCO4
- Bowtie 24
- Chipster4
- DESeq24
- Diamond4
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- Galaxy Image Analysis4
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- annotatemyids4
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- seqtk4
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- BCFtools3
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- Bwa-mem23
- Clustal 1.8 (Clustal W, Clustal X)3
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- Bakta2
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- BridgeDbR2
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- CellProfiler2
- ChIPpeakAnno2
- Combine Metaphlan and HUMAnN2
- FASTQE2
- FastTree2
- GECKO2
- GOEnrichment2
- GenomeScope 2.02
- HUMAnN22
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- InterProScan (EBI)2
- JBrowse 22
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- Standard database or policy
- FAIRsharing4
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- Minimum Information about Plant Phenotyping Experiment2
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- PRoteomics IDEntifications database2
- RDA DMP Common Standard for Machine-Actionable Data Management Plans2
- Wheat Data Interoperability Guidelines 1
- Bioschemas1
- Cellosaurus1
- Chemical Entities of Biological Interest1
- Crop Ontology1
- Datanator1
- Ensembl1
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- Identifiers.org Registry1
- Investigation Study Assay JSON1
- Investigation Study Assay Tabular1
- MDL molfile Format1
- ModelArchive1
- Multi-Crop Passport Descriptors1
- Plant Phenotype Experiment Ontology1
- Research Object Crate1
- Resource Identification Portal 1
- STRING: functional protein association networks1
- Schema.org1
- Search Tool for Interactions of Chemicals1
- Simplified Molecular Input Line Entry Specification Format1
- The European Genome-phenome Archive1
- The Human Metabolome Database1
- The Observational Medical Outcomes Partnership Common Data Model1
- UniProt Knowledgebase1
- Wheat Trait Ontology1
- Wikidata1
- Worldwide Protein Data Bank1
- Zenodo 1
- data.eNanoMapper.net1
- eNanoMapper Ontology1
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- GTN556
- SIB Swiss Institute of Bioinformatics79
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- Keyword
- Galaxy Server administration66
- Development in Galaxy45
- Single Cell38
- biodiversity36
- FAIR33
- microgalaxy33
- Foundations of Data Science31
- Ecology30
- Statistics and machine learning30
- Transcriptomics30
- jupyter-notebook29
- training29
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- Contributing to the Galaxy Training Material25
- FAIR Data, Workflows, and Research25
- Proteomics24
- FAIR principles23
- data management22
- Metadata21
- FAIR data20
- Genome Annotation20
- ansible20
- Assembly19
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- Using Galaxy and Managing your Data18
- git-gat18
- Climate17
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- Introduction to Galaxy Analyses16
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- Teaching and Hosting Galaxy training16
- fair16
- interactive-tools16
- data stewardship15
- earth-system15
- Data management planning13
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- Epigenetics13
- bioinformatics13
- metagenomics13
- work-in-progress13
- Bioinformatics12
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- Roslin Institute12
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- European research projects11
- MIGHTS11
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- Sequence analysis11
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- DMP10
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- Galaxy Community Building8
- assembly8
- data visualisation8
- español8
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- nanopore8
- Babraham Institute7
- Clinical data7
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- EBV dataset7
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- R7
- Rare Diseases & Research7
- Reproducibility7
- SARS-CoV-27
- Workflows7
- dmp7
- ecology7
- elixir7
- genomics7
- jbrowse17
- metabarcoding7
- next generation sequencing7
- programming7
- reproducibility7
- 16S6
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- DMP tools6
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- Competency level
- Beginner
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- Licence
- Creative Commons Attribution 4.0 International694
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- Target audience
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- Researchers52
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- Biologists34
- PhD candidate26
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- bioinformaticians18
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- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Biologists with little or no prior computational experience4
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- life scientists3
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- Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
- Bioinformaticians, Biologists with little or no prior computational experience.2
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- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members2
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- All postgraduates1
- Any students, postdocs or RAs who have an interest in bioinformatics and who intend to carry out statistical analysis of their experimental data using R. This two day course is planned to be a very gentle introduction to the very basic concepts of R.1
- Any students, postdocs or RAs who have an interest in bioinformatics and who intend to conduct their own analyses on a Linux platform. Those intending to register for the upcoming Introduction to HPC course are very strongly encouraged to attend this short (two morning) course and it should be seen as a prerequisite for later courses to be offered on ChIP-Seq analysis and command line/Galaxy implementations of NGS workflows.1
- Any students, postdocs or RAs who have an interest in programming and who intend to carry out computational analysis of their experimental data. Perl is often used for preparing input files for more specialized software such as R, and also to post-process the output from R and various other bioinformatics tools. It is a glue language allowing you to build pipelines of analyses of arbitrary complexity. This two day course is planned to be a gentle introduction to the basic concepts of Perl and will also introduce you to the BioPerl library of modules.1
- Anyone1
- Anyone dealing with cell lines with no or little knowledge of the Cellosaurus resource.1
- Anyone wishing to interpret graphs showing the progression of COVID-19.1
- Beginner informatics1
- Beginners in statistics1
- Biochemists1
- Bioimage Analysts1
- Biologists and bioinformaticians1
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- Author
- Helena Rasche94
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- SIB Swiss Institute of Bioinformatics49
- Björn Grüning42
- Simon Gladman34
- Yvan Le Bras26
- Nate Coraor25
- Nicola Soranzo24
- Anton Nekrutenko23
- John Chilton23
- Subina Mehta20
- Marie Josse19
- Wendi Bacon18
- Katarzyna Kamieniecka17
- Krzysztof Poterlowicz17
- Anne Fouilloux16
- Anthony Bretaudeau16
- Fotis E. Psomopoulos15
- Mehmet Tekman15
- Paul Zierep15
- Bazante Sanders14
- Mijke Jetten14
- Julia Jakiela13
- Katherine Do13
- Maria Doyle13
- Monique Zahn13
- The Carpentries13
- Anup Kumar11
- Pavankumar Videm11
- Cristóbal Gallardo10
- Dave Clements10
- Donny Vrins10
- James Johnson10
- Khaled Jum'ah10
- Martin Čech10
- Celia van Gelder9
- Delphine Lariviere9
- Egon Willighagen9
- Marius van den Beek9
- Anika Erxleben8
- Daniel Blankenberg8
- Helen Brown8
- Kaivan Kamali8
- Lucille Delisle8
- Personalized Health Informatics Group8
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- Wandrille Duchemin8
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- Diana Pilvar7
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- Anne Pajon6
- Clemens Blank6
- Coline Royaux6
- ELIXIR Goblet Train the Trainers6
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- Michael Charleston6
- Morgan Howells6
- Philippe Le Mercier6
- Philippe Rocca-Serra6
- Sara Morsy6
- Valentin Loux6
- Xenia Perez Sitja6
- Alex Ostrovsky5
- Alexandre Cormier5
- Dechen Bhuming5
- Deepak Tanwar5
- Eija Korpelainen5
- Emma Leith5
- Erwan Corre5
- Federico Bianchini5
- Geert van Geest5
- Gildas Le Corguillé5
- Heleri Inno5
- Hélène Chiapello5
- Kellie Snow5
- Korneel Hens5
- Laura Leroi5
- Mira Kuntz5
- Munazah Andrabi5
- Nick Juty5
- Polina Polunina5
- Priit Adler5
- Saskia Lawson-Tovey5
- Solenne Correard5
- Stéphanie Robin5
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- Amirhossein Naghsh Nilchi4
- Beatriz Serrano-Solano4
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- Cyril Monjeaud4
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- Saskia Hiltemann473
- Helena Rasche411
- Björn Grüning333
- Bérénice Batut200
- Nicola Soranzo157
- Martin Čech116
- Cristóbal Gallardo90
- Niall Beard83
- Anthony Bretaudeau77
- Nate Coraor66
- Wendi Bacon65
- Armin Dadras56
- Gildas Le Corguillé55
- William Durand54
- Simon Gladman50
- Marius van den Beek45
- Mehmet Tekman44
- Lucille Delisle42
- Teresa Müller42
- Yvan Le Bras42
- Marie Josse36
- Pavankumar Videm36
- Beatriz Serrano-Solano29
- Wolfgang Maier26
- Maria Doyle22
- Anne Fouilloux21
- Anup Kumar20
- Julia Jakiela20
- Khaled Jum'ah17
- Tristan Reynolds17
- Melanie Föll16
- Petros Kountouris16
- Pratik Jagtap16
- Subina Mehta16
- Paul Zierep15
- Simon Bray15
- Deepti Varshney14
- Donny Vrins14
- Marisa Loach14
- Bazante Sanders13
- David López13
- Mira Kuntz13
- Timothy J. Griffin13
- Anton Nekrutenko12
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- Matthias Bernt12
- Pablo Moreno12
- Daniela Schneider11
- Gianmauro Cuccuru11
- Katarzyna Kamieniecka11
- Mélanie Petera11
- Peter van Heusden11
- Paul De Geest9
- Elin Kronander8
- John Chilton8
- Kaivan Kamali8
- Verena Moosmann8
- Wolmar Nyberg Åkerström8
- Amirhossein Naghsh Nilchi7
- Anna Syme7
- Florian Heyl7
- Hans-Rudolf Hotz7
- Katherine Do7
- Leonid Kostrykin7
- Markus Englund7
- Mattias Strömberg7
- Melissa Burke7
- Morgan Howells7
- Niclas Jareborg7
- Stephan Nylinder7
- Tomas Klingström7
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- Alexandre Cormier6
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- Ekaterina Polkh6
- Erik Hedman6
- Mallory Freeberg6
- Sabine Österle6
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- Alex Ostrovsky5
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- Bert Droesbeke5
- Catherine Bromhead5
- Diana Chiang Jurado5
- John Davis5
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- Vassilios Ioannidis5
- Vicky Schneider5
- Andrea Bagnacani4
- Clea Siguret4
- Coline Royaux4
- Daniel Sobral4
- Dave B.4
- Eli Chadwick4
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- Fotis E. Psomopoulos4
- Phil Reed4
- Pinar Alper4
- Sotiroula Chatzimatthaiou4
- Tim Beck4
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- Related resource
- Associated Training Datasets253
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- Jupyter Notebook (without Solutions)29
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- OpenCloning1
- OpenRefine1
- Public Health Alliance for Genomic Epidemiology1
- R basics1
- RDMkit1
- REPET image Docker1
- Ready For BioData Management?1
- Recoding1
- Slides for Introduction to statistics with R 1
- Video Walkthrough of the Poster1
- Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle1
- Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle1
- compareMS21
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- recorded guidance on how to install a SciNote account1
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- recorded presentation on integration of ELNs in nanosciences1
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- HemaFAIR Training: Applying FAIR Principles in Hematology Research16
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- Elements of Data Management5
- RDMbites: Data management essentials5
- SARS-CoV-2 : Studying a new virus5
- ELIXIR SIS-Containers - collection of training materials4
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- 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
- ELIXIR hCNV community - collection of courses and materials.1
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Training materials

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Training materials

Introduction to DNA Methylation data analysis

Introduction to ChIP-Seq data analysis

EWAS Epigenome-Wide Association Studies Introduction

Reference Genomes in Galaxy

Empathy

Galaxy Monitoring

Advanced customisation of a Galaxy instance

Gearing towards production

Controlling Galaxy with systemd or Supervisor

Galaxy on the Cloud