Training materials
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Presentation, course materials
Introduction to Nextflow workshop
• BeginnerWorkflows Nextflow DSL2 -
Life Science Literature Database, Life Sciences Literature Database
Using Europe PMC for effective literature research
• BeginnerLiterature search peer reviewed articles Europe PMC, Preprints Data links Annotations Europe PMC, ORCID -
Video
Annotating data using next generation biobanking ontology (NGBO)
• BeginnerData integration and warehousing Ontology and terminology Standards Ontologies Data Integration data harmonization Standardised vocabulary -
Video
Applying data standards to the harmonization of COVID-19 datasets from different sources
• BeginnerData integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies -
Video
Useful ontologies for harmonizing cohort data
• BeginnerData integration and warehousing Data management Ontology and terminology Ontologies Cohort data data annotation -
Presentation, Vignette, Video
Research Data Management in Life Sciences
• BeginnerData management -
Tutorial
SPARQLing Biology: a beginners course
• BeginnerBiology Query and retrieval Sparql queries Sparql syntax -
Tutorial, Documentation
runBioSimulations tutorial and help
• BeginnerSystems biology Computational biology Simulation experiment Modelling and simulation biosimulators COMBINE OMEX SED-ML Modeling dynamic simulations … -
Tutorial
Use Scholia and Wikidata to find scientific literature
• BeginnerLiterature -
e-learning
Data Management and Writing a Data Management Plan
• BeginnerData management