Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Biological sequences4
    • Sequence analysis4
    • Sequence databases4
    • Assembly3
    • Sequence assembly3
    • Community analysis2
    • Environmental microbiology2
    • Metagenomics2
    • Microbial ecology2
    • Microbiome2
    • Molecular community analysis2
    • Shotgun metagenomics2
    • Antimicrobial stewardship1
    • DNA polymorphism1
    • DNA variation1
    • Disease1
    • Epidemiology1
    • Epigenomics1
    • Exomes1
    • Genetic linkage1
    • Genetic variation1
    • Genome annotation1
    • Genomes1
    • Genomic variation1
    • Genomics1
    • Linkage1
    • Linkage mapping1
    • Mapping1
    • Medical microbiology1
    • Microbial genetics1
    • Microbial physiology1
    • Microbial surveillance1
    • Microbiological surveillance1
    • Microbiology1
    • Microsatellites1
    • Molecular infection biology1
    • Molecular microbiology1
    • Mutation1
    • Pathology1
    • Personal genomics1
    • Polymorphism1
    • Public health1
    • Public health and epidemiology1
    • RFLP1
    • SNP1
    • Single nucleotide polymorphism1
    • Somatic mutations1
    • Synteny1
    • Synthetic genomics1
    • Taxonomy1
    • VNTR1
    • Variable number of tandem repeat polymorphism1
    • Viral genomics1
    • Whole genomes1
    • snps1
    • Show N_FILTERS more
    • Tool
    • BamTools
    • Galaxy278
    • FastQC33
    • MultiQC23
    • SAMtools22
    • BEDTools16
    • scikit-learn16
    • BWA15
    • Data Stewardship Wizard15
    • Falco13
    • SCANPY13
    • DeepTools12
    • fastp12
    • BLAST11
    • Cutadapt11
    • taxonomy_krona_chart10
    • GEMINI9
    • ggplot29
    • Bandage8
    • FASTX-Toolkit8
    • FreeBayes8
    • NanoPlot8
    • QUAST8
    • RStudio8
    • JBrowse7
    • RDMkit7
    • STAR7
    • Trimmomatic7
    • Biopython6
    • Trim Galore6
    • COPASI5
    • Flye5
    • HISAT25
    • MetaPhlAn5
    • Minimap25
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • Salmon5
    • Unicycler5
    • anndata5
    • kraken25
    • BUSCO4
    • Bowtie 24
    • Chipster4
    • DESeq24
    • Diamond4
    • European Nucleotide Archive (ENA)4
    • Galaxy Image Analysis4
    • KrakenTools4
    • MACS4
    • MaxQuant4
    • Ontology Lookup Service4
    • Workflow4Metabolomics4
    • annotatemyids4
    • bx-python4
    • mothur4
    • scikit-image4
    • seqtk4
    • snpEff4
    • BCFtools3
    • Bracken3
    • Bwa-mem23
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DropletUtils3
    • GOseq3
    • Galactic Circos3
    • GraPhlAn3
    • MAFFT3
    • MSstats3
    • Newick Utilities3
    • R3
    • RSeQC3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
    • StringTie3
    • Zooma3
    • export2graphlan3
    • gffcompare3
    • humann3
    • msConvert3
    • xcms3
    • Bakta2
    • Bowtie2
    • BridgeDbR2
    • Cardinal2
    • CellProfiler2
    • ChIPpeakAnno2
    • Combine Metaphlan and HUMAnN2
    • FASTQE2
    • FastTree2
    • GECKO2
    • GOEnrichment2
    • GenomeScope 2.02
    • HUMAnN22
    • Heinz2
    • InterMine2
    • InterMineR2
    • InterProScan (EBI)2
    • JBrowse 22
    • MAGeCK2
    • Show N_FILTERS more
    • Content provider
    • GTN6
    • Show N_FILTERS more
    • Keyword
    • microgalaxy3
    • Microbiome2
    • Sequence analysis2
    • Epigenetics1
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • Variant Analysis1
    • assembly1
    • cyoa1
    • deutsch1
    • español1
    • italiano1
    • metagenomics1
    • prokaryote1
    • Show N_FILTERS more
    • Competency level
    • Beginner
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International6
    • Show N_FILTERS more
    • Target audience
    • Students6
    • Show N_FILTERS more
    • Author
    • Bérénice Batut3
    • Engy Nasr2
    • Joachim Wolff2
    • Paul Zierep2
    • Alex Ostrovsky1
    • Anton Nekrutenko1
    • Cristóbal Gallardo1
    • Florian Heyl1
    • Helena Rasche1
    • Pavankumar Videm1
    • Polina Polunina1
    • Saskia Hiltemann1
    • Vini Salazar1
    • Show N_FILTERS more
    • Contributor
    • Björn Grüning6
    • Helena Rasche6
    • Saskia Hiltemann6
    • Bérénice Batut5
    • Niall Beard3
    • Nicola Soranzo3
    • William Durand3
    • Anthony Bretaudeau2
    • Cristóbal Gallardo2
    • Paul Zierep2
    • Wolfgang Maier2
    • Alex Ostrovsky1
    • Anton Nekrutenko1
    • Anup Kumar1
    • Deepti Varshney1
    • Ekaterina Polkh1
    • Engy Nasr1
    • Florian Heyl1
    • Gildas Le Corguillé1
    • Hans-Rudolf Hotz1
    • Lucille Delisle1
    • Maria Doyle1
    • Mehmet Tekman1
    • Mélanie Petera1
    • Natalie Whitaker-Allen1
    • Nate Coraor1
    • Pavankumar Videm1
    • Polina Polunina1
    • Teresa Müller1
    • Tristan Reynolds1
    • Vijay1
    • Show N_FILTERS more
    • Resource type
    • e-learning5
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets6
    • Associated Workflows6
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Hide materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: BamTools

and Competency level: Beginner

and Include broken links: true

6 materials found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • Beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Assembly of metagenomic sequencing data

    • Beginner
    Metagenomics Sequence assembly Microbial ecology Microbiome assembly metagenomics microgalaxy
  • e-learning

    CUT&RUN data analysis

    • Beginner
    Epigenomics Epigenetics
  • e-learning

    Calling variants in non-diploid systems

    • Beginner
    Genetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote
  • e-learning

    Mapping

    • Beginner
    Sequence analysis Mapping Sequence analysis deutsch español italiano
  • slides

    Mapping

    • Beginner
    Sequence analysis Sequence analysis
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.