Training materials
-
Online material, hands-on tutorial
Introduction to Docker and Singularity
• BeginnerReproducibility Container Singularity -
hands-on tutorial
Hands-on for 'Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition' tutorial
• BeginnerMetagenomics metagenomics Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa -
youtube video, video
Data Management Planning tips
• BeginnerData management FAIR data ELIXIR-CONVERGE DMP data management plan research data management FAIR principles DMP tools DMP templates tool … -
youtube video, video
ELIXIR resources and Data Management Plans tools: RDMkit and Data Stewardship Wizard
• BeginnerData management FAIR data ELIXIR-CONVERGE ELIXIR DMP data management plan research data management FAIR principles DMP tools DMP templates … -
e-learning
Removing the effects of the cell cycle
• BeginnerSingle Cell -
e-learning
Comparing inferred cell compositions using MuSiC deconvolution
• BeginnerSingle Cell transcriptomics -
e-learning
Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution
• BeginnerSingle Cell data management transcriptomics -
e-learning
Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution
• BeginnerSingle Cell data management -
e-learning
NCBI BLAST+ against the MAdLand
• BeginnerSequence analysis Sequence analysis plants -
slides
Galaxy from an administrator's point of view
• BeginnerGalaxy Server administration