Materials - TeSS (Training eSupport System)

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- Data management109
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- Biological sequences36
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- Data handling42
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- Data analysis13
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- Data brokering2
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- Design2
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- File reformatting2
- Format conversion2
- Alignment1
- Alignment construction1
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- Allele calling1
- Annotation1
- Exome variant detection1
- Functional genome annotation1
- Genome annotation1
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- Germ line variant calling1
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- RNA-Seq analysis1
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- Somatic variant calling1
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- Galaxy277
- FastQC33
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- scikit-learn16
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- Data Stewardship Wizard14
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- SCANPY13
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- fastp12
- BLAST11
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- taxonomy_krona_chart10
- GEMINI9
- ggplot29
- Bandage8
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- RStudio8
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- RDMkit7
- STAR7
- Trimmomatic7
- BamTools6
- Trim Galore6
- Biopython5
- COPASI5
- Flye5
- MetaPhlAn5
- Minimap25
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- Salmon5
- Unicycler5
- anndata5
- kraken25
- BUSCO4
- Bowtie 24
- Chipster4
- DESeq24
- Diamond4
- European Nucleotide Archive (ENA)4
- Galaxy Image Analysis4
- HISAT24
- KrakenTools4
- MACS4
- MaxQuant4
- Ontology Lookup Service4
- Workflow4Metabolomics4
- annotatemyids4
- bx-python4
- mothur4
- scikit-image4
- seqtk4
- snpEff4
- BCFtools3
- Bracken3
- Bwa-mem23
- Clustal 1.8 (Clustal W, Clustal X)3
- DropletUtils3
- GOseq3
- Galactic Circos3
- GraPhlAn3
- MAFFT3
- MSstats3
- Newick Utilities3
- R3
- RSeQC3
- SeqCode3
- SortMeRNA3
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- Zooma3
- export2graphlan3
- humann3
- msConvert3
- xcms3
- Bakta2
- Bowtie2
- BridgeDbR2
- Cardinal2
- CellProfiler2
- ChIPpeakAnno2
- Combine Metaphlan and HUMAnN2
- FASTQE2
- FastTree2
- GECKO2
- GOEnrichment2
- GenomeScope 2.02
- HUMAnN22
- Heinz2
- InterMine2
- InterMineR2
- InterProScan (EBI)2
- JBrowse 22
- MAGeCK2
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- Standard database or policy
- FAIRsharing4
- European Nucleotide Archive3
- Common Workflow Language2
- Minimum Information about Plant Phenotyping Experiment2
- OBO Foundry2
- Ontology Lookup Service2
- PRoteomics IDEntifications database2
- RDA DMP Common Standard for Machine-Actionable Data Management Plans2
- Wheat Data Interoperability Guidelines 1
- Bioschemas1
- Cellosaurus1
- Chemical Entities of Biological Interest1
- Crop Ontology1
- Ensembl1
- IUPAC International Chemical Identifier1
- Identifiers.org Registry1
- Investigation Study Assay JSON1
- Investigation Study Assay Tabular1
- MDL molfile Format1
- ModelArchive1
- Multi-Crop Passport Descriptors1
- Plant Phenotype Experiment Ontology1
- Research Object Crate1
- Resource Identification Portal 1
- STRING: functional protein association networks1
- Schema.org1
- Search Tool for Interactions of Chemicals1
- Simplified Molecular Input Line Entry Specification Format1
- The European Genome-phenome Archive1
- The Human Metabolome Database1
- The Observational Medical Outcomes Partnership Common Data Model1
- UniProt Knowledgebase1
- Wheat Trait Ontology1
- Wikidata1
- Worldwide Protein Data Bank1
- Zenodo 1
- data.eNanoMapper.net1
- eNanoMapper Ontology1
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- GTN554
- SIB Swiss Institute of Bioinformatics78
- DTLS - Dutch Techcentre For Life Sciences32
- VIB Training & Conferences20
- Bioinformatics and Biomathematics Training Hub16
- ELIXIR13
- ELIXIR Estonia10
- CINECA PROJECT9
- IFB French Institute of Bioinformatics9
- NBIS9
- CSC - IT Center for Science7
- Department of Bioinformatics - BiGCaT, Maastricht University6
- ELXIR-UK DaSH6
- Barcelona Supercomputing Center (BSC)5
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- Glittr.org5
- ELIXIR Luxembourg4
- NanoCommons4
- University of Cambridge Bioinformatics Training4
- Centre for Genomic Regulation (CRG)3
- ELIXIR Portugal3
- European Bioinformatics Institute (EBI)3
- University of Edinburgh3
- BioData.pt2
- Danish National Health Data Science Sandbox2
- InterMine2
- Pattern Institute2
- PerMedCoE2
- de.NBI2
- Cloud-SPAN1
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- EOSC4Cancer1
- FAIRsharing1
- Health-RI1
- Novo Nordisk Foundation Center for Protein Research1
- SciLifeLab1
- Seqera1
- Software Sustainability Institute1
- The Carpentries1
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- Keyword
- Galaxy Server administration66
- Development in Galaxy45
- Single Cell38
- biodiversity36
- microgalaxy33
- Foundations of Data Science31
- Ecology30
- FAIR30
- Statistics and machine learning29
- Transcriptomics29
- jupyter-notebook29
- training29
- Microbiome28
- Contributing to the Galaxy Training Material25
- FAIR Data, Workflows, and Research25
- FAIR principles22
- data management22
- Metadata21
- Proteomics21
- Genome Annotation20
- ansible20
- Assembly19
- FAIR data19
- Using Galaxy and Managing your Data18
- git-gat18
- Climate17
- Data analysis16
- Data management16
- HemaFAIR16
- Introduction to Galaxy Analyses16
- Open Science16
- Teaching and Hosting Galaxy training16
- fair16
- interactive-tools16
- Research Data Management15
- earth-system15
- data stewardship14
- Data management planning13
- Epigenetics13
- metagenomics13
- work-in-progress13
- Data reuse12
- Data sharing12
- Roslin Institute12
- paper-replication12
- prokaryote12
- CONVERGE11
- European research projects11
- MIGHTS11
- Ontologies11
- Sequence analysis11
- Variant Analysis11
- Python10
- Standards10
- genes and genomes10
- ocean10
- plants10
- research data management10
- Bioinformatics9
- DMP9
- ELIXIR-CONVERGE9
- cyoa9
- transcriptomics9
- Data management plan8
- Evolution8
- FAIR Data8
- Galaxy Community Building8
- Metabolomics8
- assembly8
- data visualisation8
- español8
- gmod8
- label-free8
- medicine and health8
- nanopore8
- Clinical data7
- DDA7
- EBV dataset7
- EBV workflow7
- Interoperability7
- R7
- Reproducibility7
- SARS-CoV-27
- Workflows7
- dmp7
- ecology7
- jbrowse17
- metabarcoding7
- next generation sequencing7
- programming7
- reproducibility7
- 16S6
- Computational modelling6
- Data Management6
- Data Management Plan6
- Data management planning6
- EeLP6
- Imaging6
- Programming6
- RStudio6
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- Competency level
- Beginner
- Not specified2289
- Intermediate253
- Advanced42
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- Licence
- Creative Commons Attribution 4.0 International692
- License Not Specified96
- Creative Commons Attribution Share Alike 4.0 International45
- Creative Commons Attribution Non Commercial Share Alike 4.0 International17
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- Creative Commons Attribution Non Commercial No Derivatives 4.0 International10
- MIT License10
- Creative Commons Attribution 1.0 Generic5
- Creative Commons Zero v1.0 Universal5
- Apache License 2.04
- Creative Commons Attribution Non Commercial 4.0 International4
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- GNU General Public License v3.0 only2
- Creative Commons Attribution Non Commercial 2.0 Generic1
- GNU General Public License v2.0 only1
- Open Data Commons Attribution License v1.01
- Other (Open)1
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- Target audience
- Students422
- Galaxy Administrators111
- Researchers50
- Instructors49
- PhD candidate26
- Biologists25
- Data stewards22
- Life Science Researchers22
- PhD candidates20
- Bioinformaticians17
- Data Scientist16
- Data managers16
- Scientists16
- Data Managers14
- bioinformaticians14
- PhD students13
- PhD Students12
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- Researcher10
- Researcher in life sciences10
- Clinicians8
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- Beginner7
- Bench biologists7
- Biomedical Researchers7
- Computational biologists7
- Life scientists7
- Master students7
- biologists7
- Biomedical researchers6
- Trainers6
- Chemists5
- PI5
- data stewards5
- modelers5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Biologists with little or no prior computational experience4
- Laboratory technicians4
- Scientific community4
- Training Designers4
- Training instructors4
- Veterinarians4
- project manager4
- Academia/ Research Institution3
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- Bioinformatician, Bioanalysts3
- Biologists, Genomicists, Computer Scientists3
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- Healthcare3
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- Non-Profit Organisation3
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- Post-Doctoral Fellows3
- beginner bioinformaticians3
- biocurators3
- data steward / data manager3
- life scientists3
- researchers3
- Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
- Bioinformaticians, Biologists with little or no prior computational experience.2
- Clinical Scientists2
- Data Manager2
- Database users2
- Graduate Students2
- Graduate students2
- Ontologists2
- Patient Advocates 2
- PhD2
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members2
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- Postdocs and Staff members2
- Principal Investigators (PIs)2
- Professor2
- Research scientists2
- Staff2
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- Undergraduate students2
- computational scientists2
- data managers2
- database managers2
- plant researchers2
- policy officer2
- post-docs2
- software developers, bioinformaticians2
- rare disease patients representatives1
- Anyone1
- Anyone dealing with cell lines with no or little knowledge of the Cellosaurus resource.1
- Anyone wishing to interpret graphs showing the progression of COVID-19.1
- Beginner informatics1
- Beginners in statistics1
- Biochemists1
- Bioimage Analysts1
- Biologists and bioinformaticians1
- Biologists interested in learning about RNA-seq1
- Biophysicists1
- Biotechnology Companies1
- Computer Vision scientists1
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- Author
- Helena Rasche94
- Bérénice Batut93
- Saskia Hiltemann53
- SIB Swiss Institute of Bioinformatics49
- Björn Grüning42
- Simon Gladman30
- Yvan Le Bras26
- Nate Coraor25
- Nicola Soranzo24
- Anton Nekrutenko23
- John Chilton23
- Marie Josse19
- Subina Mehta19
- Wendi Bacon18
- Katarzyna Kamieniecka17
- Krzysztof Poterlowicz17
- Anne Fouilloux16
- Anthony Bretaudeau16
- Fotis E. Psomopoulos15
- Mehmet Tekman15
- Paul Zierep15
- Bazante Sanders14
- Mijke Jetten14
- Julia Jakiela13
- Maria Doyle13
- Monique Zahn13
- The Carpentries13
- Katherine Do12
- Anup Kumar11
- Pavankumar Videm11
- Cristóbal Gallardo10
- Dave Clements10
- Donny Vrins10
- Khaled Jum'ah10
- Martin Čech10
- Celia van Gelder9
- Delphine Lariviere9
- Egon Willighagen9
- James Johnson9
- Marius van den Beek9
- Anika Erxleben8
- Daniel Blankenberg8
- Helen Brown8
- Kaivan Kamali8
- Lucille Delisle8
- Personalized Health Informatics Group8
- Robert Andrews8
- Alexander Botzki7
- Branka Franicevic7
- Diana Pilvar7
- Joachim Wolff7
- Laura Cooper7
- Patricia Palagi7
- Pratik Jagtap7
- Sergio Martínez Cuesta7
- Wandrille Duchemin7
- Wolfgang Maier7
- Allegra Via6
- Andrew Mason6
- Anna Syme6
- Anne Pajon6
- Clemens Blank6
- Coline Royaux6
- ELIXIR Goblet Train the Trainers6
- Melanie Föll6
- Michael Charleston6
- Morgan Howells6
- Philippe Le Mercier6
- Philippe Rocca-Serra6
- Sara Morsy6
- Valentin Loux6
- Xenia Perez Sitja6
- Alex Ostrovsky5
- Alexandre Cormier5
- Dechen Bhuming5
- Deepak Tanwar5
- Emma Leith5
- Erwan Corre5
- Federico Bianchini5
- Geert van Geest5
- Gildas Le Corguillé5
- Heleri Inno5
- Hélène Chiapello5
- Kellie Snow5
- Korneel Hens5
- Laura Leroi5
- Mira Kuntz5
- Munazah Andrabi5
- Nick Juty5
- Polina Polunina5
- Priit Adler5
- Saskia Lawson-Tovey5
- Solenne Correard5
- Stéphanie Robin5
- Alireza Khanteymoori4
- Amirhossein Naghsh Nilchi4
- Beatriz Serrano-Solano4
- Bruna Piereck4
- Cyril Monjeaud4
- Diana Chiang Jurado4
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- Contributor
- Saskia Hiltemann472
- Helena Rasche411
- Björn Grüning333
- Bérénice Batut199
- Nicola Soranzo157
- Martin Čech116
- Cristóbal Gallardo90
- Niall Beard83
- Anthony Bretaudeau77
- Nate Coraor66
- Wendi Bacon65
- Armin Dadras56
- Gildas Le Corguillé55
- William Durand54
- Simon Gladman50
- Marius van den Beek45
- Mehmet Tekman44
- Lucille Delisle42
- Teresa Müller42
- Yvan Le Bras42
- Marie Josse36
- Pavankumar Videm36
- Beatriz Serrano-Solano29
- Wolfgang Maier26
- Maria Doyle22
- Anne Fouilloux21
- Anup Kumar20
- Julia Jakiela20
- Khaled Jum'ah17
- Tristan Reynolds17
- Melanie Föll16
- Petros Kountouris16
- Subina Mehta16
- Paul Zierep15
- Pratik Jagtap15
- Simon Bray15
- Deepti Varshney14
- Donny Vrins14
- Marisa Loach14
- Bazante Sanders13
- David López13
- Mira Kuntz13
- Anton Nekrutenko12
- Delphine Lariviere12
- Matthias Bernt12
- Pablo Moreno12
- Timothy J. Griffin12
- Daniela Schneider11
- Gianmauro Cuccuru11
- Katarzyna Kamieniecka11
- Mélanie Petera11
- Peter van Heusden11
- Paul De Geest9
- Elin Kronander8
- John Chilton8
- Kaivan Kamali8
- Verena Moosmann8
- Wolmar Nyberg Åkerström8
- Amirhossein Naghsh Nilchi7
- Anna Syme7
- Florian Heyl7
- Hans-Rudolf Hotz7
- Katherine Do7
- Leonid Kostrykin7
- Markus Englund7
- Mattias Strömberg7
- Melissa Burke7
- Morgan Howells7
- Niclas Jareborg7
- Stephan Nylinder7
- Tomas Klingström7
- Yvonne Kallberg7
- Alexandre Cormier6
- Dave Clements6
- Ekaterina Polkh6
- Erik Hedman6
- Mallory Freeberg6
- Sabine Österle6
- Solenne Correard6
- Alex Ostrovsky5
- Alireza Khanteymoori5
- Bert Droesbeke5
- Catherine Bromhead5
- Diana Chiang Jurado5
- John Davis5
- Stéphanie Robin5
- Vassilios Ioannidis5
- Andrea Bagnacani4
- Clea Siguret4
- Coline Royaux4
- Daniel Sobral4
- Dave B.4
- Eli Chadwick4
- Enis Afgan4
- Fotis E. Psomopoulos4
- Phil Reed4
- Pinar Alper4
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- online course2
- online tutorial2
- scripts2
- slideck/ presentation2
- API reference1
- Book1
- Carpentries style curriculum1
- Computer Science1
- Computer Software1
- Data Science1
- Education1
- Jupyter notebooks1
- Life Science Literature Database1
- Life Sciences Literature Database1
- Metadata Registry1
- Mock data1
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- examples1
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- Related resource
- Associated Training Datasets252
- Associated Workflows232
- Jupyter Notebook (with Solutions)28
- Jupyter Notebook (without Solutions)28
- The Carpentries7
- Quarto/RMarkdown Notebook3
- DMPonline2
- Slides2
- Workshop recording2
- CanCOGeN1
- Data Stewardship Wizard1
- Data Visualisation (theory) 1
- DisProt1
- FAIR for busy biologists1
- FAIR in (biological) practice1
- GEEM1
- Galaxy project guided tours1
- GitHub1
- MobiDB1
- Next generation biobanking ontology (NGBO)1
- OpenCloning1
- OpenRefine1
- Public Health Alliance for Genomic Epidemiology1
- R basics1
- RDMkit1
- REPET image Docker1
- Ready For BioData Management?1
- Slides for Introduction to statistics with R 1
- Video Walkthrough of the Poster1
- Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle1
- Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle1
- compareMS21
- pydna1
- recorded guidance on how to install a SciNote account1
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- Collection
- HemaFAIR Training: Applying FAIR Principles in Hematology Research16
- PINK project9
- ELIXIR Biodiversity Community5
- Elements of Data Management5
- RDMbites: Data management essentials5
- SARS-CoV-2 : Studying a new virus5
- ELIXIR SIS-Containers - collection of training materials3
- ELIXIR Toxicology Community3
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