Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Assembly1
    • DNA variation1
    • Genetic variation1
    • Genomic variation1
    • Mutation1
    • Polymorphism1
    • Sequence assembly1
    • Somatic mutations1
    • Show N_FILTERS more
    • Tool
    • SAMtools
    • Galaxy6
    • snpEff3
    • BWA2
    • FASTX-Toolkit2
    • fastp2
    • BCFtools1
    • Falco1
    • FastQC1
    • NanoPlot1
    • SRA Software Toolkit1
    • Unicycler1
    • lofreq1
    • seqtk1
    • Show N_FILTERS more
    • Content provider
    • GTN2
    • Show N_FILTERS more
    • Keyword
    • covid19
    • Epigenetics6
    • Transcriptomics4
    • Variant Analysis4
    • ChIP-seq3
    • Assembly2
    • QC2
    • Sequence analysis2
    • Single Cell2
    • work-in-progress2
    • BIoinformatics1
    • Heatmap1
    • Introduction to Galaxy Analyses1
    • Microbiome1
    • Nanopore data analysis1
    • Nextflow1
    • Pathogens detection1
    • Phylogenetic tree1
    • RNA-seq1
    • RStudio1
    • Workflows1
    • animals1
    • assembly1
    • biodiversity1
    • collections1
    • cyoa1
    • deutsch1
    • español1
    • genome1
    • italiano1
    • microgalaxy1
    • mouse1
    • nf-co.re1
    • one-health1
    • plants1
    • virology1
    • Show N_FILTERS more
    • Competency level
    • Beginner
    • Intermediate2
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International2
    • Show N_FILTERS more
    • Target audience
    • Students2
    • Show N_FILTERS more
    • Author
    • Anton Nekrutenko1
    • Cristóbal Gallardo1
    • Daniel Blankenberg1
    • Dave Clements1
    • Marius van den Beek1
    • Show N_FILTERS more
    • Contributor
    • Björn Grüning2
    • Helena Rasche2
    • Saskia Hiltemann2
    • Anton Nekrutenko1
    • Cristóbal Gallardo1
    • Mélanie Petera1
    • Nicola Soranzo1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Resource type
    • e-learning1
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows2
    • Associated Training Datasets1
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: SAMtools

and Keywords: covid19

and Competency level: Beginner

2 materials found
  • e-learning

    From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis

    • Beginner
    Genetic variation Variant Analysis covid19 one-health virology
  • slides

    Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

    • Beginner
    Sequence assembly Assembly covid19
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.